Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01055 ATGGGCATTGAAGATGTCCCCGTTGTGATTGTCGGTGCTGGCCCTGCTGGCTTAGCAACCGCTGCATGCCTTAACAAACTTTCAATCCCCAACGTGATCATTGAAAGAGATGATTGCCATGCATCTCTTTGGAGGAAAAGGGCCTATGATCGCTTGAAACTTCACTTAGGCAAAGAATTTTGCAACCTCCCCCACATGCCCTTTCCCTCTGATTTTCCCACCTTTGTTCCAAGAGTTGAGTTTTTGCGTTACTTGGATAACTATGTCACCTCTTTCAACATTTCCATCCGGTACAACAGGAACGTGGAATCTGCGTTTCTTGATGACAATGATGGAAAATGGAGGGTTGTTGTGAAGGACATGGTCTCAAATGCTGAGGAGGTTTACGTGTCAGATTATCTGGTGGTTGCAACCGGTGAGAATAGCGAGGGCTTTATTCCCAACATTCATGGCCTCAAAGGGTTTGAAGGAGAATACATCCATTGCAGCAAGTACATGAATGGAAGAGACATGTATGGCAAAAACGTCCTTGTTGTTGGCTGTGGTAATTCTGGCATGGAGATCGCTTATGATCTCACCAATTGGGGTGCAAATACCTCTATTGTTATTAGGGGCCCTGTTCATTATTTCACTAAAGAAATGGTGTACGTGGGAATGTCCTTGCTGAAGTACTTCAAAATAGAGAAGGTGGACAAGCTTATGTTGCTCATGAGCAAACTCAAGTACGGAGACATGACTGAATATGGCGTGGTGAGACCAAAGGATGGACCTTTCGCTCTGAAGAAAAAGGGTGGTACTACCCCTACCATTGATGTGGGTTGCATTAACAGGATTAAGAAAGGCCTAGTCCAGGTTTTCCCAGGTGTTTCAAGCATAGAAGGCAAGACGGTTGAGTTTGAGGATGGGAGAAGTAGTGAATTTGATATCATAATCTTTGCTACCGGATACACTAGCACTGTGCTCAAGTGGCTTAAGGATTACCAAGATCTGTTCAATGAGCAAGGAATGCCTAAGCCAGATTTTCCAAATCACTGGAGGGGAGAAAATGGTCTCTACTGTGCTGGATTTTCAAGGAGGGGATTAGATGGCATTTCTTTTGATGCACAGCGTATAGCAGATGACATCAGTTTCACTGTAAATGCAAGGAAGATACCTGGTGGCGAGGCTAACAATGCTTCCCTCACACTCTTGGAGAATTAA 1200 0.445 MGIEDVPVVIVGAGPAGLATAACLNKLSIPNVIIERDDCHASLWRKRAYDRLKLHLGKEFCNLPHMPFPSDFPTFVPRVEFLRYLDNYVTSFNISIRYNRNVESAFLDDNDGKWRVVVKDMVSNAEEVYVSDYLVVATGENSEGFIPNIHGLKGFEGEYIHCSKYMNGRDMYGKNVLVVGCGNSGMEIAYDLTNWGANTSIVIRGPVHYFTKEMVYVGMSLLKYFKIEKVDKLMLLMSKLKYGDMTEYGVVRPKDGPFALKKKGGTTPTIDVGCINRIKKGLVQVFPGVSSIEGKTVEFEDGRSSEFDIIIFATGYTSTVLKWLKDYQDLFNEQGMPKPDFPNHWRGENGLYCAGFSRRGLDGISFDAQRIADDISFTVNARKIPGGEANNASLTLLEN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01055 399 SUPERFAMILY FAD/NAD(P)-binding domain 6 279 IPR036188 -
Cca03g01055 399 PRINTS Pyridine nucleotide disulphide reductase class-I signature 7 29 - -
Cca03g01055 399 PRINTS Pyridine nucleotide disulphide reductase class-I signature 134 143 - -
Cca03g01055 399 PRINTS Pyridine nucleotide disulphide reductase class-I signature 175 200 - -
Cca03g01055 399 PRINTS FAD-dependent pyridine nucleotide reductase signature 8 27 - -
Cca03g01055 399 PRINTS FAD-dependent pyridine nucleotide reductase signature 175 193 - -
Cca03g01055 399 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA11-RELATED 5 383 - -
Cca03g01055 399 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 5 383 - -
Cca03g01055 399 Gene3D - 3 384 IPR036188 -
Cca03g01055 399 SUPERFAMILY FAD/NAD(P)-binding domain 174 375 IPR036188 -
Cca03g01055 399 Pfam Pyridine nucleotide-disulphide oxidoreductase 9 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01055 Cca-Chr3 25627021 25629514 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01055 K11816 - gmx:100801203 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01055 03 25627021 25629514 Cca03g01055 03 25627021 25629514 ECH