Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01049 ATGGCCATGGAGAACTGTTTAAGACTAACCACTGTAGCCACAACCACACCCCAATGCCTCTCTCCATTCTTTCCAACTTCAAGGGAAAAGCTTGTTTTCCCAACTCAAACAGGTTTCAAGAAATCCATGCTAAACTCAAAAGTGTCATACCCATCATCTCTTTATTCAACTGGTGCTACCTACAAAAAATCCCGTTTTGTTTGCAAAGCTCGTGAAGCAGTAAATGAAGTTAAAGTAGTGAATGACTCAAGCTGGAACAACCTTGTCATTGCAAGTGATACCCCCGTGCTTGTGGAATTTTGGGCACCATGGTGTGGGCCATGCAGGATGATAGCACCTGTTATCGATGAGTTAGCGAAGGAATATGCTGGAAAAATTGCATGCTACAAGCTCAACACAGATGATTCTCCAAACACAGCAACACAGTACGGCATCAGAAGCATACCAACAGTTCTGTTCTTCAAGAATGGAGAGAAAAAAGAAAGCATAATTGGTGCAGTTCCTAAGTCTACTCTGTCAGCAACAGTGGAAAAATACGTTGATTCATAA 549 0.4208 MAMENCLRLTTVATTTPQCLSPFFPTSREKLVFPTQTGFKKSMLNSKVSYPSSLYSTGATYKKSRFVCKAREAVNEVKVVNDSSWNNLVIASDTPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIACYKLNTDDSPNTATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVEKYVDS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01049 182 Pfam Thioredoxin 77 177 IPR013766 -
Cca03g01049 182 ProSiteProfiles Thioredoxin domain profile. 68 182 IPR013766 -
Cca03g01049 182 ProSitePatterns Thioredoxin family active site. 97 115 IPR017937 -
Cca03g01049 182 PANTHER THIOREDOXIN M-TYPE PROTEIN 26 179 - -
Cca03g01049 182 SUPERFAMILY Thioredoxin-like 65 181 IPR036249 -
Cca03g01049 182 PANTHER GEO12009P1 26 179 - -
Cca03g01049 182 CDD TRX_family 89 177 - -
Cca03g01049 182 PRINTS Thioredoxin family signature 96 104 - -
Cca03g01049 182 PRINTS Thioredoxin family signature 104 113 - -
Cca03g01049 182 PRINTS Thioredoxin family signature 144 155 - -
Cca03g01049 182 TIGRFAM thioredoxin: thioredoxin 81 179 IPR005746 GO:0015035
Cca03g01049 182 Gene3D Glutaredoxin 77 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01049 Cca-Chr3 25501565 25502997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01049 K03671 - gmx:100305596 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01049 03 25501565 25502997 Cca03g01049 03 25501565 25502997 ECH