Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01042 ATGCAACTCACCCAATTGCGTAGAATCACACCGTGTTTCATCTCAATAGATCGGTTTTCTTCAATAAGGAACCACATTCAGCAAGGATCATTCATATGTGCTCTTCTCACGTATAAACAAACCCGCCAAGAAGGATTCTACAACTCCAGCGTGGTCCCCCTGTTACTCAAAGCATGCGCTTCTCTTTCCTTCCTTCATCACGTGAAGGCCTTGCACGCTGAGTCCATCAAGGCAGGTTCAGATTGCCACGTCGTCATCGGAACCGCATTGCTTGCCGCGTACGCCAAATGCGGCGTCGTTAGGGATGCACGCGATGTGTTCGACACGATGCCCGAGAGAAATTTCGTGACTTGGAATGCCATGATTAGTGGGTACTTGAGGAACGGGGACACGGAATCTGCTTCTCTCGTGTTTGGTGAAATGCAGGGGAAAACGCAAGTGAGTTGGAGTCAGATGATTGGTGGGTTTGCTAGGATTGGAGATATTGTTACTGCGAGGAGGTTGTTTGATGAGGTTCCCCGTGAGTTTAAGGATGTGGTGACGTGGACTGTGATGGTTGATGGGTATGCTAGAATAGGGGAGATGGAAGCTGCTAGGGAGGTTTTTGAGATGATGCCTGAAAGGAATTGTTTTGTGTGGTCGTCTATGGTTTGTGGGTACTTCAAGAAGGGCAATGTGGTGGAGGCGGAGGCAGTTTTCGACCGGGTTCCAGTTCGGAATTTGGAGATCTGGAACTCCATGATTGCTGGCTATGTACAGAATGGATTTGGAGAGAAAGCACTGCAGGCTTTTGAGGGAATGGGGGCTGAAGGGTTTGAGCCGGATGAGTTCACTGTTGTTAGTGTTTTGTCAGCATGTGCCCAGCTGGGGCGCCTGGATGTTGGTAAGGAAATCCATCACATGGTAGAACAGAAAGGGATAACTGTGAACCCGTTTGTGTTGAGTGGATTGGTTGACATGTATGCAAAATGTGGTGACTTGGTCAGTGCAAGGTTGGTGTTTGAAGGGTTCACTGGGAGGAACATTTTCTGCTGGAATGCTATGATTTCAGGTTTTGCTATCAATGGAAAATTCAGGGAGGTTCTCGAGTTTTTTAGCAGGATGGAGGACTCAAATGTAAGGCCTGATGGTATCACCTTTATTACTGTACTCTCGGCTTGTGCTCATGGGGGTTTGGTCAGTGAAGCTTTGGAAGTGATATCCAAAATGGAGGCATATGGAGTTGAAGTTGGCATCAAGCATTATGGATGCTTGGTTGACCTCTTGGGCAGAGCAGGAAGATTAAAAGATGCTTATGACTTGATGATAAGAATGCCAGTGAAACCTAACGACACAGTTTTGGGGGCAATGCTTGGTGCATGCCGGATTCATTCAGATATGAACATGGCAGAGCTAGTAATGAAGTTGATCCGTGAAGACTCTGCTACAGGTGCGGATTCTCACAATGTGCTTTTGTCCAATATATATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGGATGAGGAGGCCCGTGGTAGATGGAGGATCTCAAAAGACACCTGGGTGTAGTTCAATAATCTTTAGTGACTCTTATGGATTGAGTGAGGTAGTTCCACGTTAA 1602 0.4682 MQLTQLRRITPCFISIDRFSSIRNHIQQGSFICALLTYKQTRQEGFYNSSVVPLLLKACASLSFLHHVKALHAESIKAGSDCHVVIGTALLAAYAKCGVVRDARDVFDTMPERNFVTWNAMISGYLRNGDTESASLVFGEMQGKTQVSWSQMIGGFARIGDIVTARRLFDEVPREFKDVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMVCGYFKKGNVVEAEAVFDRVPVRNLEIWNSMIAGYVQNGFGEKALQAFEGMGAEGFEPDEFTVVSVLSACAQLGRLDVGKEIHHMVEQKGITVNPFVLSGLVDMYAKCGDLVSARLVFEGFTGRNIFCWNAMISGFAINGKFREVLEFFSRMEDSNVRPDGITFITVLSACAHGGLVSEALEVISKMEAYGVEVGIKHYGCLVDLLGRAGRLKDAYDLMIRMPVKPNDTVLGAMLGACRIHSDMNMAELVMKLIREDSATGADSHNVLLSNIYAASEKWEKAERMRRPVVDGGSQKTPGCSSIIFSDSYGLSEVVPR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Cca03g01042 533 SUPERFAMILY TPR-like 64 235 IPR011990 GO:0005515
Cca03g01042 533 Pfam PPR repeat family 241 287 IPR002885 -
Cca03g01042 533 Pfam PPR repeat family 341 388 IPR002885 -
Cca03g01042 533 Pfam E motif 457 519 IPR046848 -
Cca03g01042 533 Gene3D Tetratricopeptide repeat domain 145 209 IPR011990 GO:0005515
Cca03g01042 533 PANTHER OS01G0913400 PROTEIN-RELATED 19 519 - -
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Cca03g01042 533 Gene3D Tetratricopeptide repeat domain 19 144 IPR011990 GO:0005515
Cca03g01042 533 Gene3D Tetratricopeptide repeat domain 210 313 IPR011990 GO:0005515
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 180 210 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 343 376 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 243 276 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 116 142 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 212 236 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 378 410 IPR002885 -
Cca03g01042 533 TIGRFAM PPR: pentatricopeptide repeat domain 88 116 IPR002885 -
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 116 143 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 147 173 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 180 210 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 415 439 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 88 115 IPR002885 -
Cca03g01042 533 Pfam PPR repeat 212 236 IPR002885 -
Cca03g01042 533 PANTHER BNACNNG13520D PROTEIN 19 519 - -
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Cca03g01042 533 Gene3D Tetratricopeptide repeat domain 314 530 IPR011990 GO:0005515
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Cca03g01042 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01042 Cca-Chr3 25388504 25390105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01042 55 523 Glycoside Hydrolase AT3G49170 31.590 1.01e-68 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01042 - - gmx:100802813 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01042 03 25388504 25390105 Cca03g01042 03 25388504 25390105 ECH