Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01037 ATGAAAAGGTGTTGGCTGGTAGGGGTGTTGGTTGTGGTAGGGTGTGTCTTCTTGTTGGGCAGTGTTGGGGTAGAAGGTTACCCTGCTGAGGATCTCATTGTGAGGTTGCCTGGTCAACCCAAGGTTGGGTTCAAGCAATATGCAGGGTATGTTGACATAGATGTCAAAAATGGGAGAAGCTTGTTCTACTATTTTGTTGAGGCTGAGAATGGCCATCACAAGAAACCCCTTGCACTTTGGCTCAATGGAGGCCCGGGATGTTCCTCAATTGGAGGAGGTGCCTTTACTGAGTTGGGTCCCTTTTATCCCAGAGGTGATGGACGTGGTCTACGAAGAAATTCAATGTCTTGGAATAGAGCATCCAATCTTCTCTTCGTGGAGTCCCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAACATTGGAGACGCATCCACAGCCAATGATATGCTTCTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTTCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGCTATTTTGGACCACAATGCTAATTCAGCTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACTTATGAATACTTCTGGTCACATGGAATGATTTCCGATGAAGTTGGCCTTGCCATTACGAATGATTGCGATTTTGATGATTATGTTTTTTCAAATACACAACATAATGTGTCTAAATCATGCAACAAAGCATTAAACAAAGCCGAAAAAATTGTTGGCGATTATATAAACAACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTAAGATTGAAAAAGATGGCTACGAAAATAAGCATAGGTGTAGATGTCTGCATGGATTATGAAAGAAGTTTTTATTTCAACCTTCCTGAGGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCGTACCAATGGAATATGTGCAGTGGTGTCTTGAATTATAGCGACACTGATCCTAACATAAACATGCTTCCAGTTCTCAAAAGGATAGTTAAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAGCTAGCGAATGAACTGAAGTTCAAGATCACAGTCCCATATGGAGCTTGGTTCCACAAAGGGCAGgtgaagaactatatcttgctaacaaattaa 1287 0.4079 MKRCWLVGVLVVVGCVFLLGSVGVEGYPAEDLIVRLPGQPKVGFKQYAGYVDIDVKNGRSLFYYFVEAENGHHKKPLALWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNTTSDYNIGDASTANDMLLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLANAILDHNANSAGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEVGLAITNDCDFDDYVFSNTQHNVSKSCNKALNKAEKIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMDYERSFYFNLPEVQKALHANRTNLPYQWNMCSGVLNYSDTDPNINMLPVLKRIVKNHIPVWVFSGDQDSVVPLLGSRTLIRELANELKFKITVPYGAWFHKGQVKNYILLTN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01037 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Cca03g01037 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Cca03g01037 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Cca03g01037 428 PANTHER CARBOXYPEPTIDASE 6 423 - -
Cca03g01037 428 Gene3D - 315 351 - -
Cca03g01037 428 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Cca03g01037 428 SUPERFAMILY alpha/beta-Hydrolases 30 421 IPR029058 -
Cca03g01037 428 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Cca03g01037 428 Gene3D - 362 426 - -
Cca03g01037 428 Gene3D alpha/beta hydrolase 28 291 IPR029058 -
Cca03g01037 428 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 423 IPR001563 GO:0004185|GO:0006508
Cca03g01037 428 Pfam Serine carboxypeptidase 38 420 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01037 Cca-Chr3 25321965 25329762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01037 K16297 - gmx:100815723 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01037 03 25321965 25329762 Cca03g01037 03 25321965 25329762 ECH