Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01035 ATGGTGCTCACATCCTCTGCGCGTGATTACATCAACCGCATCTTACACGACATCTCCGGCATGAAGGTTCTCATCCTCGATTCTCAGACGGTTGGTATTGTGAGTGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGGTAGATTCTATTTCCAAGTCAAATGAATCAATGTCACATCTCAAGGCCATTTATTTCCTTCGACCTACATCAGAGAATATCCAGCTTTTGCGCCGCCAGCTGGCTAGTCCCAGATTTGGAGAGTATCACCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACTTACTTGCTGATTCAGATGAACAGGAAATTGTCCAACAAGTTCAGGAGTTCTATGCAGACTTTGTTGCCATTGATCCTTATCATTTCACTTTGCACGTGCCTTCACATTACATATATATGCTCCCAGCTGTGATAGATCCTACAACAGTGCAGCGCTTCTGTGATCGGGTTGTTGATGGTCTTGCAGCTGTTTTTTTGGCATTAAAACGAAGACCAGTAATTAGATATCAAAGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCATCTAAACTTATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTGCTCCATTGTTGTTGGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAACTAATAGGAATCCAAGATAACAAAGTTGACTTAAAATCCATTGGTAAAATTCCAAAGGATCAGGAGGAGGTTGTGTTGTCATCAGAACAAGATTCCTTTTTCAAAACAAACATGTATGAGAATTTTGGAGACATAGGTATGAATATCAAGCGGATGGTTGATGAATTTCAGCAAGTGTCAAAAAGTAGCCAAAACATCCAAACAATAGAGGACATGGCCAAATTTGTTGACAATTACCCCGAGTACAGAAAAATGCACGGAAATGTGACAAAACATGTGACTTTAGTAACTGAAATGAGCAAGATAGTTGAAGAGCGGAAACTTATGTCAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTATTAAACAATGAAAGCATATCAGATGTGGACCGACTACGGTTGGTCATGCTGTATGCTTTAAGATATGAGAAAGACAGCCCTGTTCAATTAATGCAGCTCTTCAACAAACTGGCTTCCAGATCTGCCAAGTACAAACCTGGGCTTGTCCAGTTTCTTCTGAAGCAAGCTGGTGTTGACAAGAGAACAGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGTGTTGAGAATGTTTACACCCAGCACCAGCCACTTCTGTTTCAAATCATGGAAAGCATTGTTAAAGGGAGGTTGAGAGATGTGGACTACCCGTTTGTTGGAAATCACTTTCAACAAGGAAGGCCACAGGATGTGATAATCTTCATTGTTGGTGGAACAACTTACGAGGAATCAAGGTCTGTTGCTATGCAAAATGCCAGCAATACCGGCATTCGTTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAAGGACTTGGAAGAAGCTCAAAGGCTGAAGGATAATGTCCAATCTCAATCTGGAATTTTCTGCATATATCGAATGCAAATTCATTCTCTCATCCTCTCCACATATCTAATATTTGAGCATTTATCTGCCTATAATCAGCCTGAGGAGCAGAAGTTTTTGATTGGTCTCATTTTAATGGTTCCTGTTTATTCCTTGGAATCGTTTTTGTCACTATTGGATTCCAGTGCAGCATTTAACTGTGAAGTTATTCGGGACTGCTACGAGTCTTTTGCATTATATTGCTTTGAAAGATACTTGATAGCTTGCTTAGGTGGTGAGGACAAAACAATTCAATTTATGGAAAGTATGAGCCTAACAGACTCCAGCACTCCTCTCCTAAAAGAATCATATGCGTATGGAGTTGTAGAGCATCCATTTCCCTTAAATTGCTTCTTAAGAGACTGGTATCTTGGCCCTGACTTCTATCAATCTGTAAAAATTGGCATCGTACAATATATGATAGTGAAAATGATCTGTGCATTGCTGGCAATGATCCTCCAGTCTTTTGGAGTTTATGGAGAGGGGAAGTTTGAATGGAAATATGGGTATCCGTACTTGGCATGCATTCTTAATTTTAGTCAGACATGGGCCCTGTATTGCCTAGTACAGTTCTATTCTGTCATTAAAGATAAATTGGAGCCAATCAAACCATTGGCAAAATTTCTAACTTTTAAGTCAATCGTCTTCCTAACATGGTGGCAAGGTTTGGCTGTTGCATTTCTTTTTTCCATGGGAGCATTTAAAGGGTCATTAGCTCAAGAGCTGAAAACACGAATACAAGACTATATTATCTGCATTGAAATGGGCGTTGCTGCTGTTGTGCACCTTTATGTCTTTCCTGCAGTACCTTACAAAAGAGGAGAAAGGTGTGTCCGTAACGTGGCAGTGATGGCAGACTATGCATCACTAGGGACACCTCCTGATCCTTTTGAGGTTCAAGATTCTGAGCGCTCAACTAGAATGCGGTTGGGTCGGCCTGACCAGGGACAGAGGCGTATGAAATTTACCCATAATGTTCGTGACGTGGTCTTGGGAAGTGGTGAAATCATTGTTGACGACATGAAATTTACAGTTTCACATGTGGTAGAACCTGTTGAAAGGGGTATTGCAAAGATAAACAAAACCTTCCATGAGATATCAGAAAATGTGAAACGCCATGAAGAGGAGCGGAGGAGAAGCACCAAGGCCAAGGATGACAGTTACGTGGTTCCCCTACGTTCATGGAGAACAGAATTTTCTGATGTTCATGACAGACTTGTGGAAGGAAGTGTCAGTGATAGTGGTTTGCCCAGCAGAAAGAGTCAAAATATTCAATCCAAAGCGTCAGCATCCAGGATGAGAAGATAG 3039 0.4107 MVLTSSARDYINRILHDISGMKVLILDSQTVGIVSVVYSQSELLQKEVFLVELVDSISKSNESMSHLKAIYFLRPTSENIQLLRRQLASPRFGEYHLFFSNILKDTQIHLLADSDEQEIVQQVQEFYADFVAIDPYHFTLHVPSHYIYMLPAVIDPTTVQRFCDRVVDGLAAVFLALKRRPVIRYQRTSDIAKRIAQEASKLMYQEESGLFDFRRMEVAPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIGKIPKDQEEVVLSSEQDSFFKTNMYENFGDIGMNIKRMVDEFQQVSKSSQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMSVSQTEQELACNGGQGAAFEAVTNLLNNESISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVAMQNASNTGIRFILGGSSVLNSKRFLKDLEEAQRLKDNVQSQSGIFCIYRMQIHSLILSTYLIFEHLSAYNQPEEQKFLIGLILMVPVYSLESFLSLLDSSAAFNCEVIRDCYESFALYCFERYLIACLGGEDKTIQFMESMSLTDSSTPLLKESYAYGVVEHPFPLNCFLRDWYLGPDFYQSVKIGIVQYMIVKMICALLAMILQSFGVYGEGKFEWKYGYPYLACILNFSQTWALYCLVQFYSVIKDKLEPIKPLAKFLTFKSIVFLTWWQGLAVAFLFSMGAFKGSLAQELKTRIQDYIICIEMGVAAVVHLYVFPAVPYKRGERCVRNVAVMADYASLGTPPDPFEVQDSERSTRMRLGRPDQGQRRMKFTHNVRDVVLGSGEIIVDDMKFTVSHVVEPVERGIAKINKTFHEISENVKRHEEERRRSTKAKDDSYVVPLRSWRTEFSDVHDRLVEGSVSDSGLPSRKSQNIQSKASASRMRR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01035 1012 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Cca03g01035 1012 MobiDBLite consensus disorder prediction 873 892 - -
Cca03g01035 1012 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Cca03g01035 1012 Gene3D - 3 128 IPR043154 -
Cca03g01035 1012 Pfam Organic solute transporter Ostalpha 577 848 IPR005178 -
Cca03g01035 1012 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Cca03g01035 1012 MobiDBLite consensus disorder prediction 877 892 - -
Cca03g01035 1012 MobiDBLite consensus disorder prediction 991 1012 - -
Cca03g01035 1012 MobiDBLite consensus disorder prediction 985 1012 - -
Cca03g01035 1012 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Cca03g01035 1012 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Cca03g01035 1012 Gene3D - 353 474 - -
Cca03g01035 1012 Coils Coil 933 953 - -
Cca03g01035 1012 Coils Coil 547 567 - -
Cca03g01035 1012 Gene3D - 138 555 IPR027482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01035 Cca-Chr3 25285959 25302863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01035 K12479 - gmx:100782786 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01035 03 25285959 25302863 Cca03g01035 03 25285959 25302863 ECH