Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01022 ATGGCACCAACAGTGTCATCTGTTTTTGAGTCAGAGAGAGACCCTGTGAGATATGCACACACAGTTTCAGAGGCAGGCCGCATTCTTCCTTCAGCTAGCCGCTGGAACTCCATAGCCCTTGACTTTAAATTCACGCCTAACTCTTCCACTGCCTATGAATCTATCCCTTCCCAATATCCAAAATCTGTTGACTACAATCTTGTCATCACTAACAGGAAGCACTTTCATTGTTTTATTATTGTTCTTGTAACAATAATCTTTGCCATCTTAGCAACTGTTTTGCTGGTGCACTTTTTACCTCAGAAGCACAAGCATCAAGGGTCTTCAATCAATCTCAAATTGGCAATAAACCAGGCTCTAACATTTTATGATGCTCAAAAATCTGGGCACTATCCAAGGAACAGTCCAGTGAAATTTCGAGGAGACTCAGGATTACAGGATGGGAATTCTGCTAAGGCTAATCTTACCGGTGGATTTTATGATTCTGGAAATAACATTAAGTTTACCTTCACCACAGCCTATACTATGACCTTGTTGAGTTGGACTGTTGTGGAATATCAAAGTAAATATGCTGATATTGGTGAACTTGATCATGTTAGGGACATAATTAGATGGGGTAGTGACTACCTGCTCAAGGTGTTCATTCCCCCAAATTCAGAAGCTGGAGCAAACCTTGCATTGTATTCCCAGGTTGGAAGTACCATTAGTATTAACAATGAACCTAATGATGTGAGTTGCTGGCAACGACCTGAAGATATGAAATATGAGAGACCAGTTTCAATTTGTGATGGCTCTGCTTCAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCAGCATCGATGGTATTCAAAGAAGACAAAGATTACTCGAGGAGACTTGTCCAATCAGCAGAAAGTCTCTATGAGGCAATCACAAATGAAAAATCTACAAAACAAGGGACCTACACCATGGTTGATGCCTGTGGGAAACAATCAAGAATGCTTTATAACTCAACTAGCTACAAAGATGAGTTGGCTTGGGGAGCAACATGGTTATTTCTTGCTACTGAAAACACTGATTACCTTGCAAATGCAACCGCAATTTTTTCATCAGCCAAGAGGGATGAATCAAGTGCTGACAAAGGTATTGTTTCTTGGAATAACAAGCTCAATGCTGTCGAGGTTTTGCTTACCGGTATTCGATTCTTCCGTGATCCTGGCTTCCCACATGAGGATGTTTTGAAACTCTCATCTAACTCTACTGATATCCTCATGTGTTATTATTTATTCAATAAATACTATAGCAGGACACCCGGTGGATTGATTATCCTGAAACAAGATAACGAGCCATTACTCCAGTATGCTGCTACAGCATCTTTTCTCAGTAAATTGTACAGTGATTACCTTGATCATCTCAAAATGTCTGGTGCAAGTTGCAAGACTGATGAATTCTCGGTTGAAATGCTTCGTGATTTTTCTACTTCTCAGGTTAACTACATCTTAGGGCAAAACCCTATGAAAATGAGCTATTTAGTGGGCTATGGTGACAAGTTTCCTGTTCAGGTTCATCACAGAAGTGCATCAATCCCTTGGAATAAGCAATACTCCAATTGTGAAGATGGTAAGAAATGGCTAAACTCTAAAGATCCAAATCCACAGGTTCTTTTGGGGGCCATGGTGGGAGGGCCAGACACTAATGATAAGTTCATGGATCAGAGGACCAACCAAAAGTTTACTGAGCCAAACATAGCGAGCAATGCTGGCTTAGTTGCAGCACTGATTGCACTTCAAGATCCTCCTAATTCACGAGACATCAAAAACTCACTGTGGGGATGGACTTGA 1824 0.409 MAPTVSSVFESERDPVRYAHTVSEAGRILPSASRWNSIALDFKFTPNSSTAYESIPSQYPKSVDYNLVITNRKHFHCFIIVLVTIIFAILATVLLVHFLPQKHKHQGSSINLKLAINQALTFYDAQKSGHYPRNSPVKFRGDSGLQDGNSAKANLTGGFYDSGNNIKFTFTTAYTMTLLSWTVVEYQSKYADIGELDHVRDIIRWGSDYLLKVFIPPNSEAGANLALYSQVGSTISINNEPNDVSCWQRPEDMKYERPVSICDGSASDLAGEIVAALSAASMVFKEDKDYSRRLVQSAESLYEAITNEKSTKQGTYTMVDACGKQSRMLYNSTSYKDELAWGATWLFLATENTDYLANATAIFSSAKRDESSADKGIVSWNNKLNAVEVLLTGIRFFRDPGFPHEDVLKLSSNSTDILMCYYLFNKYYSRTPGGLIILKQDNEPLLQYAATASFLSKLYSDYLDHLKMSGASCKTDEFSVEMLRDFSTSQVNYILGQNPMKMSYLVGYGDKFPVQVHHRSASIPWNKQYSNCEDGKKWLNSKDPNPQVLLGAMVGGPDTNDKFMDQRTNQKFTEPNIASNAGLVAALIALQDPPNSRDIKNSLWGWT 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01022 607 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 493 519 IPR018221 -
Cca03g01022 607 Gene3D - 107 602 IPR012341 GO:0005975
Cca03g01022 607 PANTHER ENDO-1,4-BETA-GLUCANASE 27 601 - -
Cca03g01022 607 SUPERFAMILY Six-hairpin glycosidases 113 596 IPR008928 GO:0005975
Cca03g01022 607 Pfam Glycosyl hydrolase family 9 115 587 IPR001701 GO:0004553|GO:0005975
Cca03g01022 607 PANTHER ENDOGLUCANASE 27 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01022 Cca-Chr3 25035696 25038762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01022 61 590 Glycoside Hydrolase AT5G49720 46.296 1.75e-149 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01022 K01179 - gmx:100805472 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01022 03 25035696 25038762 Cca03g01022 03 25035696 25038762 ECH