Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01021 ATGAAGAGGAGCAGAGAGATGAAAAAGAGCTCAGAGATAAACTCTGCCATTGAAGAATTGTCTATGCTTGCTGTAGTCAAACCTGGAGGAAATCATGAGATTGCACACATACCCACAAGGCCGTTCCTATCTCTATGTTACTTTATTCTACAAGTTCTTGATAAGATAGGCCCAACGATGGCTGTTTTGAGACAAGACGTTCACCAGAATATTAAGAGGTTGGAACTGATGCACGAAATGGATCCCTCAATGAATTCAAATTTGGTTGAAATATTGAAATCAGAAGCTAGTAAAGGCAAGGCAAGGAAGAGGTCTAGTTGCAGTAAAGCCTTTCTTTGGCTCACTAGATCCCTGGATTTCTCCTCAGCATTGTTAGAAACTCTAGAAAATGACCCTAAAAAGAATATGGAGCAAATAGTTCAAGAGGCTTATGATGCAACCTTGTCACCATGGCATGGATGGATTTCATCGGCAGCTTTCAGAGTAATAGCCATTTGTTCTTTTCTTCTTTTGTTTTATCAATTTTATAATTGTTGA 537 0.3892 MKRSREMKKSSEINSAIEELSMLAVVKPGGNHEIAHIPTRPFLSLCYFILQVLDKIGPTMAVLRQDVHQNIKRLELMHEMDPSMNSNLVEILKSEASKGKARKRSSCSKAFLWLTRSLDFSSALLETLENDPKKNMEQIVQEAYDATLSPWHGWISSAAFRVIAICSFLLLFYQFYNC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01021 178 SUPERFAMILY Glycolipid transfer protein, GLTP 36 163 IPR036497 -
Cca03g01021 178 Gene3D Glycolipid transfer protein 1 168 IPR036497 -
Cca03g01021 178 PANTHER GLYCOLIPID TRANSFER PROTEIN (GLTP) FAMILY PROTEIN 4 163 - -
Cca03g01021 178 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 4 163 - -
Cca03g01021 178 Pfam Glycolipid transfer protein (GLTP) 37 163 IPR014830 GO:0005737|GO:0120009|GO:0120013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01021 Cca-Chr3 25032643 25034275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01021 - - gmx:100527808 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01021 03 25032643 25034275 Cca03g01021 03 25032643 25034275 ECH