Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01011 ATGCAGAGCAGAGGATCGAGCCATAGACTCTCGAGTATGGGTAATCGATCTCGAATTCCCGCACTCGTCATTTCCATGTTCGCTACCTTCGCTTCCATCTACGTCGCTGGAAGGTTATGGCAGGACGCACAGAATCGCGTTTATCTCATCAAAGAGCTCGATAGGATCACTGGCCAGGGTCAATCTGCTATATCTGTGGAGGATACGTTGAAGATCATAGCCTGCAGGGAACAACATAAGAAGCTTGATTCCCTTGAGACGGAACTTGCTGCTGCTAGGCAAGAGGGTTTTGTTTCAAAGCCCTTGGTGGAGACTAATGGAACTTACTCTACTAAAAGGCCGTTGGTCGTGATAGGTATACTGACAAAGTTTGGCCGCCAGAAGAATAGAGAAGCAATCCGCAAGGCATGGATGGGAAGTGGTGCAGCTTTGAAGAAAATTGAAGATGGAAAGGGCATCATTGTGCGATTCGTTATTGGTAGAAGTGAAAATCGTGGAGACAATCTGGATAAAGACATTGATCGTGAGAATAGGATGACAAATGACTTCTTAATTCTTGATAATCATGTTGAAAAAAATGATGGATTCCCAAAGAAGGCTAAATTATTCTTTGCTCATGCTGCAGACAAATGGGACGCTGAGTTTTATGCTAAAGTTAACGATGATGTTTATGTAAATATTGATGCCTTGGGAGCTACACTTGCTGCGCATTTGGACAAACCTCGTCTTTACATGGGATGCATGAAATCAGGCGAAGTTTTCTCTGAGCTGAACCATAAATGGTATGAACCAGAGTGGTGGAAATTTGGTGACAAAAAATCATATTTTCGTCATGCATCAGGAGAGATGTATGTTATATCACGAGCTTTGGCTAAATTTATATCAATAAACAGGTTAGATACACTCTTAGCTGCACCTATACTATTAGCTGCCGTTTATGCTTCAATCTTGAATATGTTGAGTTGGCAGATCTATTCTTCGCACCTATGCTCATGA 996 0.4227 MQSRGSSHRLSSMGNRSRIPALVISMFATFASIYVAGRLWQDAQNRVYLIKELDRITGQGQSAISVEDTLKIIACREQHKKLDSLETELAAARQEGFVSKPLVETNGTYSTKRPLVVIGILTKFGRQKNREAIRKAWMGSGAALKKIEDGKGIIVRFVIGRSENRGDNLDKDIDRENRMTNDFLILDNHVEKNDGFPKKAKLFFAHAADKWDAEFYAKVNDDVYVNIDALGATLAAHLDKPRLYMGCMKSGEVFSELNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRLDTLLAAPILLAAVYASILNMLSWQIYSSHLCS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01011 331 Coils Coil 75 95 - -
Cca03g01011 331 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT1 1 298 - -
Cca03g01011 331 Pfam Domain of unknown function (DUF4094) 18 94 IPR025298 -
Cca03g01011 331 Gene3D - 105 301 - -
Cca03g01011 331 Pfam Galactosyltransferase 129 297 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca03g01011 331 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 298 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01011 Cca-Chr3 24837199 24844204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01011 22 298 Glycosyltransferase AT5G53340 70.397 1.60e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01011 K20854 - gmx:100779561 563.533