Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01005 ATGGCGGATTCAGAGCGATTCCAAAATCCCTGGATGGCTTCCGACCAAACTGCAACCCATGCCACGCATTTCAGGGAACGCCAATCTTCCAACTCTGACAATTTGGGAATCGGAGAGCGAGCTTTCTCTGCCTCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTTGATCTTGCCAAGACAAGGTTGCAAGCACAGGCTGCAGGGGTCGCTTATTCTCATCCCCTCAGTAATATGACTAGTCGAATGGCTTGTTTTGGCCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCGTCATGCAACCGGGCTGGAATCCAAGGCACAGTGTCAATTTGCCCTCCTGACTGTTTTCGCTACAAAGGAACATTGGATGTCCTCTACAAAATTATACAACAGGAGGGGTTTGCTAGACTATGGAGAGGCACAAATGCAGGCCTGGCTCTTGCAGTGCCAACGGTAGGGATTTACCTTCCTTGCTATGACATACTTCGCAATTGGCTCGAGGGATTCACAGATAAAAATGCACCAACTGCAACTACTTATGTACCTCTAGTGGCTGGTTCATTGGCACGCTCTCTAGCTTGCGCAACTTGCTATCCTATTGAACTTGCTCGAACTCGTATGCAGGCATTTAAAGTGACTCAAATTGGTAAAAAGCCTCCTGGAGTGTTCCAGACTCTTCTAGGTGTTGTCTCGCATGTCAAGAGCACAAACAGTCCACAGAACAGCTTGCAAGGTTATCGTGTTCTGTGGACTGGCATGGGAGCTCAACTTGCTCGTGATGTACCCTTCTCTGCTATTTGTTGGTCGACACTTGAACCTACTAGAAGAAAACTTCTTAGTTTGGTTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGTGCTGGTTTTTTTGCGGGTACTTTAGCAGCTGGAGCTACATGTCCGCTAGATGTTGCAAAAACTCGAAGGCAGATTGAGACGGATCCTATTAGGGCATTGAAAATGACCACAAGACAGACATTGATGGAGGTGTGGAGAGATGGAGGCTTGAAAGGATTGTTTACTGGTTTTGGTCCTCGAGTCGCTCGAGCAGGCCCCTCCGTTGGAATTGTGATTTCTTTTTATGAAGTTGTAAAGTTTGCTCTACATCATCGGTACACATCATCATGA 1176 0.4719 MADSERFQNPWMASDQTATHATHFRERQSSNSDNLGIGERAFSASGAAFLSAIIVNPLDLAKTRLQAQAAGVAYSHPLSNMTSRMACFGPNMMFADLRCSPSCNRAGIQGTVSICPPDCFRYKGTLDVLYKIIQQEGFARLWRGTNAGLALAVPTVGIYLPCYDILRNWLEGFTDKNAPTATTYVPLVAGSLARSLACATCYPIELARTRMQAFKVTQIGKKPPGVFQTLLGVVSHVKSTNSPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSLVGGDDANALSVLGANFGAGFFAGTLAAGATCPLDVAKTRRQIETDPIRALKMTTRQTLMEVWRDGGLKGLFTGFGPRVARAGPSVGIVISFYEVVKFALHHRYTSS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01005 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 281 IPR018108 -
Cca03g01005 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 295 383 IPR018108 -
Cca03g01005 391 SUPERFAMILY Mitochondrial carrier 39 379 IPR023395 -
Cca03g01005 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 169 IPR018108 -
Cca03g01005 391 Pfam Mitochondrial carrier protein 299 385 IPR018108 -
Cca03g01005 391 Pfam Mitochondrial carrier protein 183 282 IPR018108 -
Cca03g01005 391 Pfam Mitochondrial carrier protein 36 170 IPR018108 -
Cca03g01005 391 Gene3D Mitochondrial carrier domain 109 388 IPR023395 -
Cca03g01005 391 Gene3D Mitochondrial carrier domain 11 94 IPR023395 -
Cca03g01005 391 PANTHER BNACNNG35730D PROTEIN 27 391 - -
Cca03g01005 391 PANTHER FI19922P1-RELATED 27 391 IPR045315 GO:1990542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01005 Cca-Chr3 24692088 24697894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01005 131 382 Organic Solute Cotransporters AT3G55640 27.027 2.98e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01005 K15119 - gmx:100810960 670.233