Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01001 ATGGGAGTTGTGAGTTTTTCTAGCTCAGCTTCTCGTACTCCACTTGGATTGAATACAAATTTTTCCAGCTATCGTCTGAAGAGACCATTAACTGTGGCATTTAAGGGGGATAAACACAATGACTCGGCTTTGGTTGCAACACAAGACAAAGTTCCTGTGCCTCTTGAAACGGCCAAGACGCAGAAGAAAAGGGTAGGGAAAACTAACAAAGTACCTAAGAGAGAAAGAGTGGAAAATTCTTCATCTTCCTCGGATGTGGACTACAATGAAGCTGCTGCCATGCTTGAAAATATATACAAACTCAGTCCCGCCGGTGATGCAGAATGTGTAGATGGTAAAATCAAAAGAGTCTCTCGGAGAGGGAAAAGGCTTGTTGATGGAACTGAAAAAAAGGAGTTAAACAGTGATAGGGTGGTCAGAAGCCAGAACAAGATAGCTAAACGATTGAATCTTGATCAGAGAATTTCATTAAAGAAGAATCAAGGTGGGGATGGAGTCATTCCAGGTCGAAAGAGGAAAAATGTTAAGAATAGAATTGAGAAAATTGAAGAGCTTATTAGGGAATATTCAGTATCAACTGATTTTGTCAGTATGGATTGGAAGAAAATGAGGATACCCCCGGTTCTTTCTTCTTCTGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCACTGCTTCGAGTGAAAGAAGATTTACAGAAGGAGCTTGCTAGAGAACCTGCCGATGGAGAACTAGCTGATGCAACAAACATGAGCATTGCTCAAGTAAAGAAAGCAATGGAGGTTGGTCAAGCTGCACGAAACAAACTTATCAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAAATATTTTTCAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATTACAGCAATTGATCGTTTTGAGCCTAACAGGAGATTTCGGCTATCAACATATAGTTTGTTTTGGATAAGGCATGCTATCATTCGTTCGATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGGTTCGAGCAGAGATCCAAAAGGCTAAAACTGAGTTAGCATTTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAAAAAGAGTTAATATATCCCCTAAAAGATACCATGACATAATGAAAGCATCAAAATCCATTCTTTCGCTGAACTCGAGACATACAACCACACAAGAGGAGTTCATTGATGGGATCGTTGATGATGCTGCTGTTAATGGTGATAAGAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGGAGGGGTGACAGAACGTTGGGAGAAATTGCTGGGAACTTGAATATATCTAGGGAAATGGTAAGAAAGCACGAAGTGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGCTATGTTGTATAA 1518 0.413 MGVVSFSSSASRTPLGLNTNFSSYRLKRPLTVAFKGDKHNDSALVATQDKVPVPLETAKTQKKRVGKTNKVPKRERVENSSSSSDVDYNEAAAMLENIYKLSPAGDAECVDGKIKRVSRRGKRLVDGTEKKELNSDRVVRSQNKIAKRLNLDQRISLKKNQGGDGVIPGRKRKNVKNRIEKIEELIREYSVSTDFVSMDWKKMRIPPVLSSSEHAWLFKLMQPMKALLRVKEDLQKELAREPADGELADATNMSIAQVKKAMEVGQAARNKLIKHNLRLVLFVINKYFSDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELAFELQRSPTEEEIIKRVNISPKRYHDIMKASKSILSLNSRHTTTQEEFIDGIVDDAAVNGDKRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGRGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01001 505 Gene3D - 219 261 IPR036388 -
Cca03g01001 505 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 505 - -
Cca03g01001 505 Coils Coil 351 371 - -
Cca03g01001 505 Gene3D - 347 422 IPR036388 -
Cca03g01001 505 Gene3D - 262 340 - -
Cca03g01001 505 PRINTS Major sigma-70 factor signature 299 312 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 PRINTS Major sigma-70 factor signature 323 331 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 PRINTS Major sigma-70 factor signature 444 456 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 PRINTS Major sigma-70 factor signature 465 480 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 PRINTS Major sigma-70 factor signature 480 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 190 339 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 Gene3D - 428 505 IPR036388 -
Cca03g01001 505 Pfam Sigma-70, region 4 440 493 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 Pfam Sigma-70 region 3 357 423 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 Pfam Sigma-70 region 3 227 267 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 268 493 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 Pfam Sigma-70 region 2 272 338 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cca03g01001 505 Coils Coil 172 192 - -
Cca03g01001 505 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 347 413 IPR013324 -
Cca03g01001 505 MobiDBLite consensus disorder prediction 57 85 - -
Cca03g01001 505 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 505 - -
Cca03g01001 505 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 430 503 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01001 Cca-Chr3 24625577 24629090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01001 K03093 - gmx:100812580 847.425