Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01000 ATGTCAGAGAGCCTTCGTTTGGCTGTTGCTGTTCTTGGCAATGCAGCCTCAGTTTCCCTTTACGCTGCACCAATGGTCACCTTTAAAAGAGTTATAAGGAAGAAAAGCACAGAAGAGTTTTCGTGCATTCCTTACATCATTGGACTCTTGAACTGTCTCCTTTACACTTGGTACGGTTTGCCTGTTGTAAGCTACAAGTGGGAAAATTTCCCTCTGGTCACTGTTAACGGAGTTGGAATTGCTCTTGAGTTATCCTATGTTCTCATTTATTTCTGGTATGCCTCGGCCAAAGGAAAGAGAAAGGTGGCCATGACAGCAATACCAGTTCTGCTTCTGTTCAGCATAATTGCTGCAGTGTCAGCTTTTGCATTCCATGATAATCGTCACCGAAAGCTTCTCGTGGGTAGCATTGGCTTAGGTGTTTCAGTTGCAATGTACGCATCACCCCTAGTTGTGATGAAGAAAGTTATACAAACCAAGAGCGTGGAATTCATGCCACTACCGTTATCCGTATGCTCATTCTTAGCAACTTTACTATGGCTGACTTATGGACTACTCATTCGTGATATATTCGTTGCGGGGCCAAGTGTGATTGGAACTCCCTTGGGCATTCTTCAACTTGTAATTTACTTTAAATACCGAAAAGGGAGTGCTGTGGAAGAACCAAACAAAGGGGACACGGAAAAGGGTAACTTGGAGAAGGTGGACATAGAAATTGGGAAGCTTGAAATGAATGTCACAAATCACATGAATGGAATTACTCGTGAACAATGTGTCTAA 780 0.4295 MSESLRLAVAVLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLYTWYGLPVVSYKWENFPLVTVNGVGIALELSYVLIYFWYASAKGKRKVAMTAIPVLLLFSIIAAVSAFAFHDNRHRKLLVGSIGLGVSVAMYASPLVVMKKVIQTKSVEFMPLPLSVCSFLATLLWLTYGLLIRDIFVAGPSVIGTPLGILQLVIYFKYRKGSAVEEPNKGDTEKGNLEKVDIEIGKLEMNVTNHMNGITREQCV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01000 259 PANTHER RAG1-ACTIVATING PROTEIN 1 4 252 - -
Cca03g01000 259 Pfam Sugar efflux transporter for intercellular exchange 10 97 IPR004316 GO:0016021
Cca03g01000 259 Pfam Sugar efflux transporter for intercellular exchange 133 215 IPR004316 GO:0016021
Cca03g01000 259 Gene3D - 10 107 - -
Cca03g01000 259 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 252 - -
Cca03g01000 259 Gene3D - 132 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01000 Cca-Chr3 24594513 24596445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01000 1 257 Miscellaneous Gene Families AT5G53190 54.475 4.66e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01000 K15382 - gmx:100813119 442.195