Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00999 ATGGTGAAGTTAGCATCCGCGAGGGAGTTCCGCACGTACGGGCCGGGCCTGGCGAAAAATCGGTACGAGTACATAAACGCGGGGCTGTATCTGATAGGGTCCGTCCTGCTGGTTTGCGGCATGGTGGCTCAGCTTTGGCCCGAAGCCCGATTGGGCCTCCTCCTTGCCATGAGCGCTTTGGCCATCCTCCTCCTCGTCAACCTCCACGACCTCTTCGCCCATCTCGCGGGCATCGATTTCCGCTTACCCTTGATGGCCTTCGACCTTCAACTCGCCTTCGTCGAGTTCGCCGTCCCCATCATTCACATCCTCGGATCGCTCCTTGCCTTCCTTGCCGTCTTCTTCCTTTTCATTCAGGAAGAGAAAGGACATGGCTACTTCAAACTTGAGAAACATGCTCTCAACATGCTGCTTTCGGGTACTGTCTTGTGGGTGATTGGGTCAATTCATAATTCATGCCAGATTTACGAGAGAGCCGATGGCCATGTTCAAATCTTGCAGCAGTGTGTGTACATTCCCTTTTTGATGGGGAGTTTGTCCTTCATGCTTGCTGCAATTCTCAATTACCACCACCAATCTAGTGAGATCCACCATGTCATTCATTTACTTGGTAGGACTTGGATCTGGCTAGGAATATTAGGAAGCCTGATGTTCTTTATTGGGGGATTGACAAACTTAATAAAAGTGTTCAAGATGCAACAAATGAATGGAATAAGGCTGGAGAAACTGCGAGGTGGAGCACACGAGCGATTGGCAAGTGCGAGAGAAGGACAGGTTCCACTCATAATGGAACATCATCATCAAACCATAAGCCATCATCAACCTCCAGAGACCAAAGTTACTTTACCTCCTCTTCCTACTCCTTATAAGGATGTCCTTGTTGATTTAGGGTTATTGTCTGAAATGGCATCGGTGTCTAGTCAGCCACAGTTCCGATACACTCAACCACCGTCAAAGGTGCTTCATTTGAGAAATTTGCCATGGGAGTGCACAGAGGAGGAACTGATTGAACTTGGGAAGCCGTTTGGTAAAGTTGTGAACACAAAATGCAATGTTGGGGCAAATCGAAACCAAGCTTTTATTGAATTTGCAGATTTAAATCAAGCCATTGCGATGATATCATACTATGCCTCATCATCTGAGCCTGCTCAAGTTCGAGGGAAAACTGTATATCTACAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTCCGGGGAATGTATTGTTGGTAACCATTGAGGGTGCAGATGCACGCCTTGTCAGCATTGATGTCTTGCACTTGGTTTTTTCAGCCTTTGGATATGTGCATAAGATTACTACTTTTGAGAAGACAGCAGGATTCCAGGCACTGGTGCAATTCACAGATGCAGAGACTGCCACCTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGCTATCTGTTGCCTGAGCATATGGGACCATGTACCCTTAGGATCACATATTCTGGACACTCAGATTTAAGTGTAAAATTTCAAAGCCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTGGAGGGAAGTGGACAGGCTATGGTTGGTTTGGATGGGAAAAGACTGGAGACTGAGAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAATATGCTGTAACGTTGGATGTCTTGCACATGGTTTTCTCTGCTTTTGGGCCTGTCCAAAAAATTGCAATGTTTGATAAGAATGGCGGATTACAGGCTCTGATTCAATATCCAGATACTCAGACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATATATGATGGAGGTTTTTGCAAGCTTCACATCTCCTATTCACGCCATACTGATCTTAGTATAAAGGTGAATAATGATAGGAGCCGAGATTATACCATTCCTAATACTCCTGTTGTGAATGCGCAACCCTCAATTTTAGGGCAACAATCTGTTCCCATGATGGGCCATCCTGCTCAACCATACAACGGGTCTCAGGCTGGATGGGGGACAGGTCCACCAGCACAATTTCAATCAATAGAGATAAGGCACTCTTCTTCACAGTTCACACAATCTCTTCCCTCACTTCACATGGCCACACTTCAAGCTTCTCTTCTCTGCAGAGCTTCCCTCCCATTCACCTCTCACAACCATCGCCATCCTCTTCTCTACAACAAGCTCCCTCTCTCTCCATGCAGACTCTCGCGCTCCTCCGCCGAAACCCAAACACCTCCCAGTTCAACCAAACACGAACACAGGTTACCGATCGCCGCGTTCTTCGAGGGAGCGCGAGAGACTGCCCAAAAGGCTTTCTCCGATTTCGCTAACTGGTTCCCGCTCTGGCAACAGGAGAGGCGTTTGGCTAGGTTAATTATCGACGCCGAGGCTAATCCCAATGACGTTGCCAAACAAACTGCGCTACTTATTGAACTTAATAAGCACAGTCCTGAGTCTGTGATCAAGCACTTTGAAGGAAGGGAGGGTGCTGTAGACAGTAGAGGAGTTGTGGAATATGTTCGAGCTCTTGTGATGACTAATGCTATTGCTGAATATCTTCCAAATGAGGAATATGGGAAACCTTCTAGACTTCCTACCCTGTTGCAAGAGTTGAAGCAGCGAGCATCAGGTAACTCGGATGAGCCTATTCTTAGCCCTGGAACATCAGAAAAGCAGCCATTACATGTGGTTATGGTTGATCCCAAGGTATCACAAAAGTCACGTTTTGTACAGGATCTTTTATCAACTATTTTGTTTATTGTTGTTATGGGATTGGTCTGGGTTATGGGTATGGTTGCACTTCAAAAATTCATAGTAAGCTTGGGTGGGATTGGAACTTCAAGTTCTGGATCAAGTACTTCATATGCCCCAAAGGAACTAAATAAGGAAGTGATGCCGGAAAAGAATGTGAAAACATTTAAAGATGTGAAAGGTTGTGATGATGCAAAACAAGAACTTGAGGAAGTTGTGGAGTACTTGAAAAATCCGGCTAAATTTACCCGCCTTGGAGGAAAGTTGCCGAAGGGGATTCTCTTGACAGGACCTCCTGGAACTGGAAAAACTCTGCTAGCCAAGGCTATTGCTGGAGAAGCCGGTGTTCCCTTTTTCTATCGGGCAGGATCAGAATTTGAGGAGATGTATGTTGGAGTTGGTGCTCGACGTGTAAGATCATTATTTCAAGCAGCAAAAAAGAAGGCTCCTTGTATCATTTTCATCGATGAAATAGATGCTGTTGGTTCAACTAGGAAACAGTGGGAGGGTCATACAAAGAAGACATTGCATCAACTACTCGTTGAAATGGATGGATTTGAGCAGAATGAAGGAATAATAGTAATGGCTGCAACAAACCTGCCTGATATTCTTGATCCTGCTTTAACGAGGCCTGGTAGATTTGATCGACATATTATTGTACCAAATCCGGATTTACGGGGTCGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCTTTGGCTGATGATGTAGATATTAAAACAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCTATTAAAGCTGCTGTTGAAGGTGCAGAGAAGTTAGCAGCTGCACAGTTGGAGTTTGCCAAAGATAGAATAATTATGGGTACAGAACGGAAAACAATGTCCATATCAGAAGAGTCAAAAAAGCTTACTGCTTATCATGAGAGTGGTCATGCAATAGTTGCCATTAACACTGAGGGTGCTCAACCAATTCACAAGGCAACAATCTTGCCTCGTGGATCTGCTTTAGGAATGGTCACGCAGCTTCCCTCTGGTGATGAGACATCAGTCAGCAAGAAGCAGTTACTAGCTCGCCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAAGAAATTATCTTCGGTCAGGATCATATCACAACTGGAGCAAGCAGTGATCTAAACTCGGCTACTGAGCTTGCCCAATATATGGTA 3984 0.4521 MVKLASAREFRTYGPGLAKNRYEYINAGLYLIGSVLLVCGMVAQLWPEARLGLLLAMSALAILLLVNLHDLFAHLAGIDFRLPLMAFDLQLAFVEFAVPIIHILGSLLAFLAVFFLFIQEEKGHGYFKLEKHALNMLLSGTVLWVIGSIHNSCQIYERADGHVQILQQCVYIPFLMGSLSFMLAAILNYHHQSSEIHHVIHLLGRTWIWLGILGSLMFFIGGLTNLIKVFKMQQMNGIRLEKLRGGAHERLASAREGQVPLIMEHHHQTISHHQPPETKVTLPPLPTPYKDVLVDLGLLSEMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGYVHKITTFEKTAGFQALVQFTDAETATSAKDALDGRSIPSYLLPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNAQPSILGQQSVPMMGHPAQPYNGSQAGWGTGPPAQFQSIEIRHSSSQFTQSLPSLHMATLQASLLCRASLPFTSHNHRHPLLYNKLPLSPCRLSRSSAETQTPPSSTKHEHRLPIAAFFEGARETAQKAFSDFANWFPLWQQERRLARLIIDAEANPNDVAKQTALLIELNKHSPESVIKHFEGREGAVDSRGVVEYVRALVMTNAIAEYLPNEEYGKPSRLPTLLQELKQRASGNSDEPILSPGTSEKQPLHVVMVDPKVSQKSRFVQDLLSTILFIVVMGLVWVMGMVALQKFIVSLGGIGTSSSGSSTSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMYVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIIVPNPDLRGRQEILELYLQDKPLADDVDIKTIARGTPGFNGADLANLVNIAAIKAAVEGAEKLAAAQLEFAKDRIIMGTERKTMSISEESKKLTAYHESGHAIVAINTEGAQPIHKATILPRGSALGMVTQLPSGDETSVSKKQLLARLDVCMGGRVAEEIIFGQDHITTGASSDLNSATELAQYMV 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00999 1328 Gene3D Peptidase M41 1220 1328 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca03g00999 1328 CDD RRM3_PTBPH1_PTBPH2 544 640 IPR034794 -
Cca03g00999 1328 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 756 1328 - -
Cca03g00999 1328 Pfam AAA+ lid domain 1167 1200 IPR041569 -
Cca03g00999 1328 Pfam Peptidase family M41 1226 1328 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca03g00999 1328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 397 IPR000504 GO:0003723
Cca03g00999 1328 Pfam ATPase family associated with various cellular activities (AAA) 1016 1144 IPR003959 GO:0005524|GO:0016887
Cca03g00999 1328 Pfam RRM-like domain 544 622 IPR021790 -
Cca03g00999 1328 Gene3D - 543 649 IPR012677 -
Cca03g00999 1328 Gene3D - 413 522 IPR012677 -
Cca03g00999 1328 CDD AAA 990 1144 - -
Cca03g00999 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1243 IPR027417 -
Cca03g00999 1328 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 919 1328 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca03g00999 1328 SUPERFAMILY RNA-binding domain, RBD 551 645 IPR035979 GO:0003676
Cca03g00999 1328 CDD RRM1_PTBPH1_PTBPH2 317 397 IPR034792 -
Cca03g00999 1328 SUPERFAMILY RNA-binding domain, RBD 307 402 IPR035979 GO:0003676
Cca03g00999 1328 SMART AAA_5 1012 1147 IPR003593 -
Cca03g00999 1328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 374 IPR000504 GO:0003723
Cca03g00999 1328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 480 IPR000504 GO:0003723
Cca03g00999 1328 SUPERFAMILY RNA-binding domain, RBD 426 519 IPR035979 GO:0003676
Cca03g00999 1328 Gene3D - 1146 1219 - -
Cca03g00999 1328 CDD RRM2_PTBPH1_PTBPH2 411 505 IPR034793 -
Cca03g00999 1328 Gene3D - 306 412 IPR012677 -
Cca03g00999 1328 PANTHER METALLOPROTEASE M41 FTSH 756 1328 - -
Cca03g00999 1328 SUPERFAMILY FtsH protease domain-like 1227 1328 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca03g00999 1328 SMART rrm1_1 548 618 IPR000504 GO:0003723
Cca03g00999 1328 SMART rrm1_1 320 393 IPR000504 GO:0003723
Cca03g00999 1328 ProSitePatterns AAA-protein family signature. 1115 1133 IPR003960 GO:0005524|GO:0016887
Cca03g00999 1328 Gene3D - 956 1145 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00999 Cca-Chr3 24545864 24584717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00999 780 1328 Miscellaneous Gene Families AT5G53170 83.060 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00999 K08955 K14948 gmx:100814187 1072