Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00996 ATGACGCTGTCACTTGCATCCATCCTAGCTACCTTCCTTGAGCAGGACTTGCTGGTGCTAGCATCATATCTCCTGCATGGTAAACCTTTGCATATGCAAAATCAAGAAAAAATGACTAAGAGAAGCAATATGGAAAACAAGGCATCTCATATTCATGCAGGAAATAATATAATTGTAGTATGTGCTACCTTTGGGATTACTCTATATATGGAGGAACACGGCATGCAGAGTGGGAGTGACTTTATTCTAAACGGTGTCTTGTCTAGTAAAGCACACTGTGTTACCAAGGTGCTTGACCAGGATAGATGGTCACAAGCTGAAGCTAGAACTACACAGCTTCTTGAACATATTCAACCCAACCCCATAACAGAAGCACGTCGAAATGCTGTCGTATCTTACCTACGATTACTGATCATGAAGCGTACCCCTTGTCAGGTATTTGCATTTGGGTCCGTACCGTTAAAGACCTATTTACCAGATGGGGATATTGATCTAACAGCGTTTTGTGATGATCAACAATCGGAAGAAAGACTGATCCACGATGTACTGCAGGTTTTGCAAAGAGAAGAGAAGAAAAATAATGCGGAATTTGATGTGAAAGAGGTTAAGTATGTCCGTGCAGAGGTGAAAATCATAAAATGCTTAGTGGAAAGCTATATTGTTGATATATCCTTCAATCAAATCAGTGGTCTAGGAACATTGTGCTTTCTCGAGGAGGTTGACTATATGATACAACAGGACCACTTATTCAAAAGAAGTGTCATACTGATAAAAGCATGGTGTTACTATGAGAGCCGCATCCTGGGTTCTCACCATGGACTCATTTCAACCTATGCATTGGAAACTTTAGTCATTTATGTTTTTCATGTTTACAGTAAAACATTTGCTGGGCCACTTGAGGTACTTCTTCGATTTCTGGATTTATTCAGTGGATTTGACTGGACGAATTATTGCATCAGTTTGCGGGGACCTGTGCGTATCAGTTCACTCCCAAACATGAGAGCTGAGCCTCCACGAAAGAATTGCCAAGAGTTGCTGCTCAGAGAACAATTTCTTTATGGTTGCGAGTCCTGCTATGGTGTAATGCCTAGCAGCCAGGAACTCAGAGAGAAACCTTTTGCTTCCAAATTCCTCAACATTGTTGATCCTTTGCGTTCTAACAACAATTTGGGGCGTAGCATCAATAAGGGTAACTTCTGTAGGATAAAAAGTGCAATTGCTTTTGGTGCTAAACAGATAGAGAGATTGCTGGATTGTCCAAAAGATAAAATAATAGCTGAATTTGATTTGTTCTTCAAAAACACATGGGATAGAAATGGGAATGGTTACTGGATGGATACACACAGTTATGATCTTTGTTTAAAGAATAATAATGTTACTGGTCATGAATCTGAGGTTGAGTTGACTCAAGCTTCTCATGGTATTTACCAAATTCCTGCTAACCATTTAGAGGAATCAAAAATGTTTGGAACCTCTGATGTATCTGCTGCTTCTCAAACTTGGAGCTCAACGAATAACAGCATTTTCACTGGTGCAATGACCTCTGGTATAGAGCACACAAATACCACGAACAATGCAATAGCTAATAGAGCCCAAAGTCCTATGTATTCATCAAATGAAGTTCAGGACATGCTTCACTTTCAAGGGTATTATACTGGTTCAGAGTTTAGTCATTTGTATAGTGAAGCTCCAACTCATCATTACTACAACACCGGAATTTCACCTGAAAATCAGCAATCTTTTGGGCAGATTTCATTCGATTGGGTAAATGGATATGCATATGACCTAGAAAATACTTCAAGCAATTATTATCATGAATATGGCTATGTGGTCAATGAACAAAATGTCTTTCCTGTTGACGAGGGAATGCTGATGCATCAGGAAGAGCATAATTATCCTAATTTCAATGGATATCTGCAAGCACCAGTGAATGTGAATTCAAGTGATGTAGCATCTTTTccacaaccaccaccaccacATGTTTTAACTTCAGGATACGGACATGAAAACTCACTTGAAGTGTTTCCTGAAGATGTCCATTCTTTTGAATCCTTTCCAAGCCACAATATGCCCTACTCTCATGGCACAGCTCCATTTCCTTCAGAATGGTTTCCATTGTATGAGGAAGAACAGGCTGAACCAGTTAATCATAACGTGTTAATACCTTGCTCAGATCAGCAAAGGCAAATGGCTGTTAACATTGGTTCCAGATCTGGTAATTCATCTTTGCATTCTGGTGCTAGAAGTTACACACCAAAAAATCATGGAGTAACTACTCAACAAAAATGGGTAGTCAGAGAAAAAGGTAGTAGTAGTCCACCAGACAATAAAATTATAAATAAAGATGTGAACACTGGAGCAAGTTCTGGTTCCAAATCTTCTTTGCTTCCAACCCCTGGGACCAGCCTTCCTTCCTCTAATGTCTCAAGTGAACCATCTTCAGAAACTCCTCAACCTGATGGTGTCAGTGGAAACTGTATTGGTCAATCAACAATAGGCACTGACTTGTGTGAGATCACAAGTACTGAAGCTGTTACTTCACATGTTCATAATCTTCAATTAAGTAGGAAACTTCCAATGATTGTGTCTAATTCATCATTTCCTGAGAAATCTCCTGTTTATGCTGGTCCTTTTGTTTCAAGTCAGAGAGCTGTTGATAGCCAAAGTTTGTTACCAGTTGCAGATGGTTCCTCTGGACCATTTCAAGTTCCTAACATGTTCTCATACTACAATCTCCCCACTGAGACTGGAACTACTTTTGCAGCCACCAATGATGGGCACATGGATGCTGAGCTAGGTTATTTTTATCCACATGAGTCATCAATTGTAGGTTTGGATTCTACTCAACATGCTTATCATACCAGTTATGATGCATCAGGGTACTTTGTGAAAGAAGGTTCAGATATTTTGGATGGTGATTTTCCAAGCTATTGGGTGAATCTGCAATATGCAAGGATTTACAAGAATCCACAACTACTGGAGTCCTTGCCTCCTCCCTCTACTACACAGCAAATGCATTTAAGGGGACAACTTTCAAGGAATAAGAAATCTACTGATGTCATGAACAATACGGGGCATGTTCAAACCCCAGTTCCTGTGATGCCACCTCGACGTGCTTCTCCCTTGCATGGGAGTACTAATGAACGTGGTAGTTTTTGGATTCCTAGATTTAGTGATGGGACCGGGACTTACCTGCCAAACACATCAAATTATTTCCAGAGGTATTACAGGAGAAAACATCATCACAGAAGTCGTTATCTCAGAAATCTCAAATATGAACAGAAGGGTAAACAATCTGAAAGGGGAGATACGAATTTGAATTCAAAAGAAAGTTTTCCCATCCTTGGTCAGTTGAAGACAGGTTCAAATGAATCATCACGTCGAGGTGAAAACTCACGAAGTGGTATTAGAGAGGTGGCAAATTCTGAAGGTTCTACTAAATATCACTCCTCATCATCAAAAATCCTTGGGGCTCAATAA 3480 0.3963 MTLSLASILATFLEQDLLVLASYLLHGKPLHMQNQEKMTKRSNMENKASHIHAGNNIIVVCATFGITLYMEEHGMQSGSDFILNGVLSSKAHCVTKVLDQDRWSQAEARTTQLLEHIQPNPITEARRNAVVSYLRLLIMKRTPCQVFAFGSVPLKTYLPDGDIDLTAFCDDQQSEERLIHDVLQVLQREEKKNNAEFDVKEVKYVRAEVKIIKCLVESYIVDISFNQISGLGTLCFLEEVDYMIQQDHLFKRSVILIKAWCYYESRILGSHHGLISTYALETLVIYVFHVYSKTFAGPLEVLLRFLDLFSGFDWTNYCISLRGPVRISSLPNMRAEPPRKNCQELLLREQFLYGCESCYGVMPSSQELREKPFASKFLNIVDPLRSNNNLGRSINKGNFCRIKSAIAFGAKQIERLLDCPKDKIIAEFDLFFKNTWDRNGNGYWMDTHSYDLCLKNNNVTGHESEVELTQASHGIYQIPANHLEESKMFGTSDVSAASQTWSSTNNSIFTGAMTSGIEHTNTTNNAIANRAQSPMYSSNEVQDMLHFQGYYTGSEFSHLYSEAPTHHYYNTGISPENQQSFGQISFDWVNGYAYDLENTSSNYYHEYGYVVNEQNVFPVDEGMLMHQEEHNYPNFNGYLQAPVNVNSSDVASFPQPPPPHVLTSGYGHENSLEVFPEDVHSFESFPSHNMPYSHGTAPFPSEWFPLYEEEQAEPVNHNVLIPCSDQQRQMAVNIGSRSGNSSLHSGARSYTPKNHGVTTQQKWVVREKGSSSPPDNKIINKDVNTGASSGSKSSLLPTPGTSLPSSNVSSEPSSETPQPDGVSGNCIGQSTIGTDLCEITSTEAVTSHVHNLQLSRKLPMIVSNSSFPEKSPVYAGPFVSSQRAVDSQSLLPVADGSSGPFQVPNMFSYYNLPTETGTTFAATNDGHMDAELGYFYPHESSIVGLDSTQHAYHTSYDASGYFVKEGSDILDGDFPSYWVNLQYARIYKNPQLLESLPPPSTTQQMHLRGQLSRNKKSTDVMNNTGHVQTPVPVMPPRRASPLHGSTNERGSFWIPRFSDGTGTYLPNTSNYFQRYYRRKHHHRSRYLRNLKYEQKGKQSERGDTNLNSKESFPILGQLKTGSNESSRRGENSRSGIREVANSEGSTKYHSSSSKILGAQ 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00996 1159 MobiDBLite consensus disorder prediction 1025 1047 - -
Cca03g00996 1159 MobiDBLite consensus disorder prediction 1090 1104 - -
Cca03g00996 1159 SUPERFAMILY Nucleotidyltransferase 116 268 IPR043519 -
Cca03g00996 1159 MobiDBLite consensus disorder prediction 736 827 - -
Cca03g00996 1159 Gene3D Beta Polymerase, domain 2 119 227 IPR043519 -
Cca03g00996 1159 PANTHER NUCLEOTIDYLTRANSFERASE 70 1144 - -
Cca03g00996 1159 CDD NT_PAP_TUTase 126 231 - -
Cca03g00996 1159 Gene3D - 228 428 - -
Cca03g00996 1159 SUPERFAMILY PAP/OAS1 substrate-binding domain 249 419 - -
Cca03g00996 1159 MobiDBLite consensus disorder prediction 1105 1159 - -
Cca03g00996 1159 MobiDBLite consensus disorder prediction 1090 1159 - -
Cca03g00996 1159 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 70 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00996 Cca-Chr3 24471502 24488368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00996 - - ccaj:109797485 2196.78