Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00989 ATGGAAGAAGAGAGTGGAAGTGGAGTGAGGAGAATGAAGAATACCACTGTTCTGCCGTGGGAAATGATAATTGAAATCCTGTTGAGGTTGCCGGTGAAGTCTCTTGTCCGATTCAAATGTGTATGTAAGTCATGGTTTGTTCTCCTATCAGATCCTCGCTTTGCAACATCACATTTTGAACTAGCTTCAGCACGGACACACACACTTATATTAATAGCCCCTTCTGCTTCTCAAATCCGTTTCATAGATTTCAATGCACCCCTTCACCATGATTTTGCTTCCGCTGTCATAAACCTCAGCTTTCTGCCTCCCAACACTTGTTACAAACTCCAAATCGTAGGTTCCTGTAGAGGGTTTCTACTTCTCAACTGTTGTCAAAGTCTCTGGGTGTGGAATCCATCCACACGTGTCCACAAAAAAGTATCTCCCTCACCTATTGAGTTCACTATGAATGCCATCTGTTTCACCTTATCCTATGGTTTCTGGTATGACCCATCAAAGGATGACTACTTGGTGGTTAAAGCCTCCCACAAACCAAACTCGCGATATAATGCGACATGCGTGCAGTTTTTCTCGCTCAGAGACAATGCTTGGGGAGATATTGAGGCTTCCCATTTGTCTTATTTAGACTCCTTCGAGAGCACCAAAGGAGGGTCTATTTTGAACGGTGCTATTCATTGGTTGGGGTTTCGTCATGGTATGTCAATGTTTGCCGTTGTTGCCTTTGATTTAACAAAAAGGAGTTTTTCGGAGATACCCCTGTCAGATGATTTTCAGGGTCACTTTGAATGTTGTGATTTGGGGAAACTTAGAGAATTGCTCAGTCTATATTGTATTGTGGGGTGGAACCAGTCGGTAGAAATATGGGTGATGAATGAATACAAAGTGCAATCATCTTGGACTAAGGCTATTGTTGTGTCTATTAATGATATTCCCACTGGATGCTTCTCCCTTATTTGTTCTACAAAAGATGGTGATATGGTTGGGACTAATGGGCGTTGTAGATTGGCAAAATATAATGACAAGGGTCAGCTACTAGAGCATCGATCCTATTGTAATGGTCCATGTCGATCCCAGGTCTCTGTGTATACAGAATCTCTGTTTTCACTCCCGTGA 1116 0.4256 MEEESGSGVRRMKNTTVLPWEMIIEILLRLPVKSLVRFKCVCKSWFVLLSDPRFATSHFELASARTHTLILIAPSASQIRFIDFNAPLHHDFASAVINLSFLPPNTCYKLQIVGSCRGFLLLNCCQSLWVWNPSTRVHKKVSPSPIEFTMNAICFTLSYGFWYDPSKDDYLVVKASHKPNSRYNATCVQFFSLRDNAWGDIEASHLSYLDSFESTKGGSILNGAIHWLGFRHGMSMFAVVAFDLTKRSFSEIPLSDDFQGHFECCDLGKLRELLSLYCIVGWNQSVEIWVMNEYKVQSSWTKAIVVSINDIPTGCFSLICSTKDGDMVGTNGRCRLAKYNDKGQLLEHRSYCNGPCRSQVSVYTESLFSLP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00989 371 SMART fbox_2 18 58 IPR001810 GO:0005515
Cca03g00989 371 ProSiteProfiles F-box domain profile. 12 62 IPR001810 GO:0005515
Cca03g00989 371 Pfam F-box domain 18 54 IPR001810 GO:0005515
Cca03g00989 371 Gene3D - 9 54 - -
Cca03g00989 371 PANTHER OS02G0783600 PROTEIN 16 370 - -
Cca03g00989 371 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 16 370 - -
Cca03g00989 371 SUPERFAMILY F-box domain 13 138 IPR036047 GO:0005515
Cca03g00989 371 TIGRFAM F_box_assoc_1: F-box protein interaction domain 114 326 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00989 Cca-Chr3 24351727 24353105 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00989 - - vun:114164002 440.654