Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00793 ATGGAGTTGCGAAAACCCTTCATCTGCCACTGGGTTTTCCTTTTCGTCATCATCTTTGCTCAGTTTGTCAATGGTTTTTATCTCCCCGGAAGCTATATGCACACTTACTCGAATAGGGATTTCATATATGCCAAAGTTAATTCATTGACTTCGATTGAAACCGAGCTTCCCTTCGGATATTACAGCCTCCCTTACTGCCAGCCGGATGGGGGCGTAAAGAAAAGTGCTGAGAATCTTGGAGAGCTTCTGATGGGAGATCAGATTGATAACTCGCCATACCGGTTCCAGATGAATGTAAATGAGACGGTCTACCTCTGCACCACATCCCTGTTGAATGAGCACGAGGTGAAGCTACTCAAACAAAGGACGAGGGATCTGTATCAAGTGAATATGATCCTTGACAACTTGCCTGTTATGAGGTTTACCAACCAAAATGGGGTTAAAATCCAGTGGACAGGGTTCCCTGTTGGGTACACTCCTCCTGATGGCAGTGCAGATTACATCATTAACCATCTTAAGTTCACGGTCTTGGTTCATGAATATGAAGGAAGCGGCGTTGAAATTGTGGGGACAGGGGAGGAAGGTTTGGGGGTTATTTCTGAATCTGATAAGAAAAAGGCATCCGGGTATGAAATAGTCGGTTTTCAGGTGGTACCTTGTAGTATTAAATATGATCCTGAAGTCATGTTGAAGCACAAGAGGTATGATACTCTTTCTCCCATTAGCTGCCCAGCTGAGCTTGACAAGTATCAAGTGATAAGAGAGCAGGAAAGGATATCGTTCACATACGAGGTTGAATTTGTGAAAAGCGATATAAGATGGCCATCACGTTGGGATGCTTATTTGAAGATGGAGGGTTCCCGAGTTCATTGGTTCTCGATCTTAAATTCACTTATGGTTATCTTTTTCCTTGCCGGTATTGTTTTTGTCATTTTCCTAAGAACCGTGAGGAGGGACTTGACTAGGTATGAGGAACTGGACAAAGAGACCCAAGCTCAGATGAACGAGGAGCTCTCGGGATGGAAACTTGTTGTTGGTGATGTGTTTAGGGAGCCTGATTGCTCAAAGCTTCTCTGTGTGATGGTTGGAGATGGGGTTCAAATTCTTGGAATGGCCGGTGTTACTATTGTTTTTGCAGCATTTGGCTTCATGTCACCAGCATCCCGAGGAATGCTACTAACAGGGATGATCATTTTATATCTTATCCTGGGAATTGCTGCAGGCTACGTCAGCGTGCGCTTATGGAGGACCATTAAGGGAACAACGGAAGGGTGGAGATCAATCTCCTGGTCAGCTGCATGTTTTTATCCTGGAATTGCTTTTGTCATTCTTACAGTGCTGAATTTTATTCTCTGGAGCAGCAACAGTACCGGTGCCATACCCATTTCCTTGTATTTTGAGTTGTTCTTCCTTTGGTTCTGCATTTCAGTACCCCTTACCCTCATTGGAGGATTTATGGGGACGAAAGCTCAGCCAATTGAGTATCCTGTGCGGACTAACCAGATTCCAAGGGAAATCCCTGCCCGCAAATACCCATCATGGCTTCTTGTTCTTGGTGCTGGAACTCTTCCATTTGGAACCCTCTTCATTGAGCTTTTCTTCATCCTGTCCAGTATTTGGCTTGGGAGGTTCTATTATGTGTTTGGTTTCCTGTTGGTTGTTCTTCTATTGCTAGTTATTGTTTGTGCTGAAGTGTCTGTGGTCCTCACTTACATGCATCTCTGCGTGGAAGATTGGCGGTGGTGGTGGAAGGCATTCTTTGCGTCAGGTTCTGTCGCTCTTTATGTCTTCCTGTACTCCATTAACTACTTGGTGTTCGATCTGCAGAGTCTGAGTGGACCTGTCTCAGCTACCCTTTACCTTGGCTATTCTCTACTCATGGCCATTGCAATCATGTTGTCAACCGGCACCATCGGCTTCCTTATGTCATTCTACTTTGTGCACTACTTGTTCTCATCAGTGAAGATAGATTGA 1974 0.4473 MELRKPFICHWVFLFVIIFAQFVNGFYLPGSYMHTYSNRDFIYAKVNSLTSIETELPFGYYSLPYCQPDGGVKKSAENLGELLMGDQIDNSPYRFQMNVNETVYLCTTSLLNEHEVKLLKQRTRDLYQVNMILDNLPVMRFTNQNGVKIQWTGFPVGYTPPDGSADYIINHLKFTVLVHEYEGSGVEIVGTGEEGLGVISESDKKKASGYEIVGFQVVPCSIKYDPEVMLKHKRYDTLSPISCPAELDKYQVIREQERISFTYEVEFVKSDIRWPSRWDAYLKMEGSRVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKETQAQMNEELSGWKLVVGDVFREPDCSKLLCVMVGDGVQILGMAGVTIVFAAFGFMSPASRGMLLTGMIILYLILGIAAGYVSVRLWRTIKGTTEGWRSISWSAACFYPGIAFVILTVLNFILWSSNSTGAIPISLYFELFFLWFCISVPLTLIGGFMGTKAQPIEYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLVVLLLLVIVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSATLYLGYSLLMAIAIMLSTGTIGFLMSFYFVHYLFSSVKID 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00793 657 Pfam Endomembrane protein 70 57 610 IPR004240 GO:0016021
Cca03g00793 657 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 11 657 - -
Cca03g00793 657 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 11 657 IPR004240 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00793 Cca-Chr3 17479194 17481167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00793 7 657 Miscellaneous Gene Families AT4G12650 83.103 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00793 K17086 - gmx:100782426 1241.1