Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00790 ATGTACAGTTTTGCCAAAACAACTTTGAAGCATTTGTTGCAACTGCCCATTGGATTGAACTCTGTTTTTAGTGCCTTGATGGAGACTTACCGCATTTGCAACTCAAACCCGGCTGTTTTTGACCTCCTGATTAGGGTTTGTTTGAGGGACAGGATGGTTGGAGATGCTGTGCAGACTTTCTACTTGATGGGGTTCCGGGGACTGAAGCCGTCTGTATATACGTGTAACATGGTATTAGGTTCCCTTGTGAAGGAGCAGAAAGTTGAGCTGTTTTGGTCTTTTTTCAAAGGAATGCTTGCCAAGGGGATTTGTCCTAATGTTGCTACATTCAACATGATGTTAAATGCTTTGTGTGAACAAGGGAAGTTTAAAAATGCTGGCATTCTCTTGAGGAAAATGGAAGAAAGTGGTGTTTATCCAACGACGGTCACTTACAATACTTTGCTTAATTGGTATTGCAAGAAAGGAAGGGAAATCAGGAGTGCAAAAGGTTATTTATTGTTGAAAAGGATGAGAAGAAATATGGTGTATCCTAATGAGGTAACTTATAATACTCTTATTAATGGGTTTGTTAAGGAGGGGAAGATTGAAGTTGCTGCAAAAGGAAACATTGGGGAGGCATTGAGACTAATGGATGTTATGGTATCATATGGTTTGAAACCTAATGAAGTGACATATGGGGCTCTTTTAAATGGGTTATCCAAGCATTCTGAGTTTGGACTGGTTTCCAGAATTCTTGAGAGAATGAGAATGGATGGGGTGAGAGTTGGCCATATTATTTATACAGGAATGATTGATGGGTTGTGTAAGAATGGAATGCTTGAAGAAGCTGTGAAGTTGCTGGATGATATGTTAAAAGTTTCTGTGAATCCTGATGTTGTTACATTTTCAGTGCTCATAAATGGATTTTTCAAGGTGGGGAAGATAAATAATGTGAAGGAGATTATGTGTAAGATGTATAAGACTGGACTTGTGCCAAATAGCATTTTGTATTCAACTTTAATCTACAATTATTGCAAAATGGGATACTTAAAAGAGGCATTAAATGCTTATGCAATTATGAATCGTAGTGGTCATGTGGCTGATCACTTTACATGTAATGTGTTGGTTGCCACTTTCTGTAGATGCAGGAGACTTGAAGAGGCCAAGTATGTTATGGATCACATGAGCCGGATGGGTCTTAATCCAAATTCTGTTACTTTTGATTGCATTATAAATAGTTATGGAAATTTTGGTGATGCACTCAAAGCATTTTCTATGTTTGATAAAATGAAAAGTTCAGGCCACTTCCCAAGTCAATTCACGAATGGGGGTCTATTGAAAGGACTTTGCATCAGTGGACATATTAATGAAGCCCGGAGATTTTTGTATAGACTTCGAAGCATTCCTAATGCTGTTGACAATGTTATCTTCAACACAATACTCACTTATACATGTAGATTGGGAAATTTATGTGATGCAGTTGCCCTTATTAATGAGATGGTCACAAATGATATTCTGCCTGACAATTTTACATACACTAATCTTATTGCGGGGCTATGCAAGAAGGGTAAAATAGTTGCTGccacttgttctaagaTCATTCTCCCTCACGTGCCCTTCCTTCACTTCACAAATGTATCCCCTTGTGCCTCCGCCGCTCCACTTCGGTTAGTCTCCCTCGTGCAATCTCCCTTATTCCGTGAATGCATCCCCTTGTGCCTCTGTTGTTCCCCATTAATCATTCTCCCTTGCTTTGCGAACGCAACCCCTCATGCCTCCGTCGTTCTCTTTCATTGTTTTCTCTCGTGCGCGCTCCCCATACTTGGTCTTCCTTGCTCGGTGAATGTAGGCCCTTGTGCCTTTAACGATCCCCCTTGTTCGTTCTCCCTTACATGTGCCCCCCTCTCTCGGTATtga 1899 0.4013 MYSFAKTTLKHLLQLPIGLNSVFSALMETYRICNSNPAVFDLLIRVCLRDRMVGDAVQTFYLMGFRGLKPSVYTCNMVLGSLVKEQKVELFWSFFKGMLAKGICPNVATFNMMLNALCEQGKFKNAGILLRKMEESGVYPTTVTYNTLLNWYCKKGREIRSAKGYLLLKRMRRNMVYPNEVTYNTLINGFVKEGKIEVAAKGNIGEALRLMDVMVSYGLKPNEVTYGALLNGLSKHSEFGLVSRILERMRMDGVRVGHIIYTGMIDGLCKNGMLEEAVKLLDDMLKVSVNPDVVTFSVLINGFFKVGKINNVKEIMCKMYKTGLVPNSILYSTLIYNYCKMGYLKEALNAYAIMNRSGHVADHFTCNVLVATFCRCRRLEEAKYVMDHMSRMGLNPNSVTFDCIINSYGNFGDALKAFSMFDKMKSSGHFPSQFTNGGLLKGLCISGHINEARRFLYRLRSIPNAVDNVIFNTILTYTCRLGNLCDAVALINEMVTNDILPDNFTYTNLIAGLCKKGKIVAATCSKIILPHVPFLHFTNVSPCASAAPLRLVSLVQSPLFRECIPLCLCCSPLIILPCFANATPHASVVLFHCFLSCALPILGLPCSVNVGPCAFNDPPCSFSLTCAPLSRY 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00790 632 Gene3D Tetratricopeptide repeat domain 319 462 IPR011990 GO:0005515
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Cca03g00790 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 157 201 - -
Cca03g00790 632 Pfam PPR repeat family 105 154 IPR002885 -
Cca03g00790 632 Pfam PPR repeat family 396 444 IPR002885 -
Cca03g00790 632 Pfam PPR repeat family 467 515 IPR002885 -
Cca03g00790 632 Pfam PPR repeat family 259 305 IPR002885 -
Cca03g00790 632 Pfam PPR repeat family 178 235 IPR002885 -
Cca03g00790 632 Pfam PPR repeat family 326 375 IPR002885 -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Cca03g00790 632 Gene3D Tetratricopeptide repeat domain 463 524 IPR011990 GO:0005515
Cca03g00790 632 Gene3D Tetratricopeptide repeat domain 134 199 IPR011990 GO:0005515
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 178 IPR002885 -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Cca03g00790 632 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 157 - -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Cca03g00790 632 Gene3D Tetratricopeptide repeat domain 19 133 IPR011990 GO:0005515
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Cca03g00790 632 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 200 524 - -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 73 107 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 330 362 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 109 141 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 224 255 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 181 222 IPR002885 -
Cca03g00790 632 TIGRFAM PPR: pentatricopeptide repeat domain 364 397 IPR002885 -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 36 70 IPR002885 -
Cca03g00790 632 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 157 201 - -
Cca03g00790 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 200 524 - -
Cca03g00790 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 157 - -
Cca03g00790 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca03g00790 632 Gene3D Tetratricopeptide repeat domain 200 311 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00790 Cca-Chr3 17437074 17441029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00790 290 523 Glycosyltransferase AT1G05670 23.770 3.88e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00790 - K17964 ccaj:109808401 699.123