Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00736 ATGGAGGAGAATTGGAGTGGTTGGGACTCAAACATGGTTGCGGTGTTAGAAACCCTAAGAAAAAGAGGTTGGTATTTGGAAGACACGGTCGATTTGAAGGCCATCGTCGTCTTTCAATCCGCACTTGCCGATGACCCTTCCAAGGTGGTTGAATCCGTCGAGTCAGAGCTTCTCAATTCGGACCTTAGATCCATCAGCGCCAAGTCCTTGCGCCAACCCGCTCTTCTTCGCAATCCTTCCTCTGTTCTTCAGGGTCCCATAGTTCTTCAGATAAGTTCTGCGAGGGACGTATCTAAGAGCAGCGTGGATGAGTTTCTGAGAAATTCAGGTGGTCGGAGACTTCTTAGATTGTGTCTCACTGATGGTCACTCTGAAATAACTGCTGTGGAATATTCTCACGTTCCTTCTATACCAGACAATGTGGTTCCGGGTACTAAGATCCGTTTGGAAAATAAAGTTGTGGTTCACAGTGGTATTGTTTGCTTAAATCCTAAAGTACTGACTGTATTAGGAGGTGTTGTTAAATCACTCCATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTGTCCCGATCATCTTTAAGAAAGCTAGAGAATCGTGATACAGGTGGTCCTCCATCATTTGTGAAGCTGCAGGTTGGATCTTCCTCAGGTATTGCGGATTATAACTCTAGAAGTCGTAAGCCAATTGCTGAGGTTGGTGAACCTGAGAGGAGACCATCTGATATCAAGCTAGAACCTAATCAGAAACCAAATGTTTTGGATGTAAATCTAGAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGGCTAGTAGTTCAAGCACAAGGCCGAAAGAAGTTGTGGATTCTGTTCCTGTCCAAAATCAAGCAGCTGCACAAAAATTACTTCAGAAACTGAATCACCCTAGTCAGAATGATCGTCATTTCAAGGGTCGGAAACATAGGGGCAAGGGGAAAGAAGAAGATCCAGTTGTGTTCACTCTGGAAGAATACGAGAATAGAAGGGCCCAGACAAAGCCTTCTAATAAAGACAATAATCTAGACATTAGCCGTGATGAGGATCTTGCCAGGCAGCTTCAAAATCAGCTTTACCTTGAAGACTCTCAGGGAGGATGGGGTGGTTATGAAGCCAAGGCACAAGATATTAGAATGAGTATGTTCACTTATGAAAGGGATTCTGACAGCAGCCAAATGGCaggaggaagaagtggaaggggaaggggaagaggaaggggaaaaggaaaaggaagagggagaggaagaTATGGTTATTAA 1281 0.4153 MEENWSGWDSNMVAVLETLRKRGWYLEDTVDLKAIVVFQSALADDPSKVVESVESELLNSDLRSISAKSLRQPALLRNPSSVLQGPIVLQISSARDVSKSSVDEFLRNSGGRRLLRLCLTDGHSEITAVEYSHVPSIPDNVVPGTKIRLENKVVVHSGIVCLNPKVLTVLGGVVKSLHEEWEMNQKYSGLSRSSLRKLENRDTGGPPSFVKLQVGSSSGIADYNSRSRKPIAEVGEPERRPSDIKLEPNQKPNVLDVNLESKPPQERAEDKASSSSTRPKEVVDSVPVQNQAAAQKLLQKLNHPSQNDRHFKGRKHRGKGKEEDPVVFTLEEYENRRAQTKPSNKDNNLDISRDEDLARQLQNQLYLEDSQGGWGGYEAKAQDIRMSMFTYERDSDSSQMAGGRSGRGRGRGRGKGKGRGRGRYGY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00736 426 SMART DUF1767_2 16 106 IPR033472 -
Cca03g00736 426 MobiDBLite consensus disorder prediction 317 350 - -
Cca03g00736 426 MobiDBLite consensus disorder prediction 210 224 - -
Cca03g00736 426 Pfam RecQ mediated genome instability protein 44 102 IPR013894 -
Cca03g00736 426 Pfam RecQ mediated genome instability protein 109 183 IPR013894 -
Cca03g00736 426 MobiDBLite consensus disorder prediction 408 426 - -
Cca03g00736 426 PANTHER RE01471P 14 401 - -
Cca03g00736 426 MobiDBLite consensus disorder prediction 298 350 - -
Cca03g00736 426 MobiDBLite consensus disorder prediction 229 246 - -
Cca03g00736 426 MobiDBLite consensus disorder prediction 391 426 - -
Cca03g00736 426 Gene3D - 61 190 IPR042470 -
Cca03g00736 426 MobiDBLite consensus disorder prediction 262 277 - -
Cca03g00736 426 MobiDBLite consensus disorder prediction 197 285 - -
Cca03g00736 426 PANTHER SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED 14 401 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00736 K18404 - gmx:100782461 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00736 03 14978848 14983630 Cca03g00736 03 14978848 14983630 ECH