Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00735 ATGTTGAAGCAAATTCTTAGCAAATTGCCTAAGAAGGTGCCAAAATCGGACACATCAGATTCAGTACAGAGTGATTCTGGGAGTCCTACTACTTTTGCAAATGTCTTTCAATGTACAACTGTTGGTGTTGCCATTTCAAGCAAATTAAATGCTGTGAAGCGGGTATCTTCAGTGGTATTTCCGGCAAGCTTGAATGCTGGAGTGGAAGCAGTTGACCCCCATATATCTTTCAAAGATGTTTCAAATAATCAGAAACAAAACCTGTTCATCAGTAAGTTGAATCTTTGCTGCAGAGTTTATGATCCTAGTCATCCTGATAAGAACTGCACAGAGCAAGATGTTAAACATCAAACATTGGTAGAGCTTGTTGATTTTGTTTCTTCTGGATCTGCAAAGTTCACAGAACCAGCAATAGCTGCAATGTGTAAAATGTGTGCAAGTAACTTGTTCAGGGTTTTTCCTCCTAAGTTTCGCACTAGTGCTACTTGTGGGGAAACAGAAGATGAAGAGCTTATGTTTGATCCTTCCTGGTCTAACCTCCACATTGTTTATGATCTTCTCCTTCAATTCATAAATTGTAATTCTCTTGATCTAAAGGTGGCAAAAATGCATATTGATCACTCGTTTATTGCAAGATTGCTAGACCTTTTTGACTCTGAGGATCCTAGAGAAAGAGATTGCTTGAAGGCAATTCTGCATAGAATCTATGGAAAATTCATGGTACACAGGCCTTTCATACGGAAATCTGTCAGCAATATCATCTACCGTTTTATTTTTGAGACTGAACGTCATAATGGAATTGCTGAGCTGTTGGAGATTTTTGGGAGTGTGATTTGTGGGTTTGCCTTGCCATTGAAGGAGGAGCACAAAATGTTTTTGTGTAGGGCTTTACTACCTTTACACAAACCTAAATCTGTTGGTATTTATCATCAGCAGTTAACATATTGTGTTGTACAGTTCATAGATAAGGATCCAACCCTGGCTAGCACTGTAATAATGGGACTATTGAAGTACTGGCCAGTAACAAATAGCCAAAAGGAGCTAATGTTCATAAGTGAGTTGGAAGAGGTTTTGGAAGTGACAATCATGGTTGAATTTCAGAAGATTATGGTCCCATTGTTTCGACGCATAGCTTGCTGTCTTAATAGCTATCATTACCAGGTGGCTGAGCGAGCTCATTTGCTATGGAACAACGAGTACATCCTTGATGTTGTCAACCAAAACCGGCAGGTGATTCTGCCTCTTGTGTTCTCAGCACTTGTACATAACACCCAAAACCACTGGAATCGAACAGTGCTCAATCAGACTGAGAACATGAGGAAGATGCTGTCTCAGATGGACGAGGATCTGGTGCTTGCCTGCCAACGTAAGTTGGAGGAGGAAGGTTCAAGGTCAAGCGCCGCCGCCGAACGGCGACGAATTACATGGGAACGTCTGGAAGCTGCTGCCAATGTCCATAATGTAGCTGTAGGAGGTGATGTTCTAGCATCTCCAGCATGTACTGTGGCATGCTAG 1515 0.4152 MLKQILSKLPKKVPKSDTSDSVQSDSGSPTTFANVFQCTTVGVAISSKLNAVKRVSSVVFPASLNAGVEAVDPHISFKDVSNNQKQNLFISKLNLCCRVYDPSHPDKNCTEQDVKHQTLVELVDFVSSGSAKFTEPAIAAMCKMCASNLFRVFPPKFRTSATCGETEDEELMFDPSWSNLHIVYDLLLQFINCNSLDLKVAKMHIDHSFIARLLDLFDSEDPRERDCLKAILHRIYGKFMVHRPFIRKSVSNIIYRFIFETERHNGIAELLEIFGSVICGFALPLKEEHKMFLCRALLPLHKPKSVGIYHQQLTYCVVQFIDKDPTLASTVIMGLLKYWPVTNSQKELMFISELEEVLEVTIMVEFQKIMVPLFRRIACCLNSYHYQVAERAHLLWNNEYILDVVNQNRQVILPLVFSALVHNTQNHWNRTVLNQTENMRKMLSQMDEDLVLACQRKLEEEGSRSSAAAERRRITWERLEAAANVHNVAVGGDVLASPACTVAC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00735 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 501 - -
Cca03g00735 504 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g00735 504 PIRSF PP2A_B56 4 494 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g00735 504 Gene3D - 82 482 IPR011989 -
Cca03g00735 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 501 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g00735 504 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g00735 504 SUPERFAMILY ARM repeat 86 460 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00735 Cca-Chr3 14968736 14973017 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00735 K11584 - gmx:100814349 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00735 03 14968736 14973017 Cca03g00735 03 14968736 14973017 ECH