Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00724 ATGCATACTCTATTGCCACTTTGGTATGCTCTATTAACAATTATTCCTCTTCACCACTCTGCTCCAATACTCAGCATCCCACTATACCACAAGAAAATGGCGAGTGATCATCGTCATCATCACCCTAACACAGAAGCCATGGCAGATATATACCCTATAGACGAGGCCTACGCAATGTTCCTGTGGGTCGGCACCCCAGTGCAAATCGTGTTCGTCACTCTTGACACGGGAAGCCCCATCACATGGTTCCAATGCGACCCTTGCCCCCACTGTTACCCCATGCAGCGCCCTCCCTTCAACTCACGTGCCTCAAGTTCCTTCAGAGAACTCGGGTGCTACTCCGACACGTGCCTCATCCCAATGATGAGGGGCATTTTCGGAAACTGCACTTCATGGACATGCAGATACAATGTAGAATATCAATTTTCCACGCAACctcgctctcgctctcgctctcgctcCTTCGGTAAGATGGTAACCGAAACCCTCAACTTGGAACGTTCGAATCTTCAAGTCAATGACTTCATCGTGGGGTGTGGCGATTCCTACGAAGGTCCCTTCAGGACTCAGTTTTCGGGTGTTTTTGGTCTCGGAAGAGGTCCACTTTCGGTGCAAAGTCAACTCCATGCAAAGGCCTTCTCGTTTTGCATGGTGAGTCAAGAATCCGAGAAACCCTCGTCTCTTGAGTTTTACGACACGCCACCTAAACCACACCAACGTGGTAGAAACGTTTCCATTATGGTTCCATTGAGGGACAATAGTTGGTACCCTTACTATTACTTTGTGCAGTTTGTGGGAATAGGGATCAACGGCTTCATGTTGGATATTCAATCTAGTGTTTGGGGTTACGGGCTTAACTACGATGCTGGGGTTGTTGTGGACACGGGAACGGTGTTAACCTATTTGCCACGTGATGCGTATAGTGTGTTTAGGTCGGAGATACGTAGAACGGATCGTAACCTTACCAAGAGACGAGGGTATGAGGAGCTAGAGTTTTGTTACGAAGAAGGTGCAACGAATGTTTATCCAACCGTTGAATTTTACTTTGAGAATGGTGATGTTGCGGGTGAGAATTTTGTGTCATTCAAGTTGGACAACGACCAATTGCTCTTGAGAGTGGAAGAGGGAACGGTTTGTTTGGCGTTTGCTGAAGGGAAAAATTCTGCACTTACGGTGATTGGCAGTAACAATCTCCAAGGAACTCAGTTAATGTATGATCTGGTCAATGAGATCCTTGTCTTCACGTATAATAACTGTTAG 1260 0.4563 MHTLLPLWYALLTIIPLHHSAPILSIPLYHKKMASDHRHHHPNTEAMADIYPIDEAYAMFLWVGTPVQIVFVTLDTGSPITWFQCDPCPHCYPMQRPPFNSRASSSFRELGCYSDTCLIPMMRGIFGNCTSWTCRYNVEYQFSTQPRSRSRSRSFGKMVTETLNLERSNLQVNDFIVGCGDSYEGPFRTQFSGVFGLGRGPLSVQSQLHAKAFSFCMVSQESEKPSSLEFYDTPPKPHQRGRNVSIMVPLRDNSWYPYYYFVQFVGIGINGFMLDIQSSVWGYGLNYDAGVVVDTGTVLTYLPRDAYSVFRSEIRRTDRNLTKRRGYEELEFCYEEGATNVYPTVEFYFENGDVAGENFVSFKLDNDQLLLRVEEGTVCLAFAEGKNSALTVIGSNNLQGTQLMYDLVNEILVFTYNNC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00724 419 Pfam Xylanase inhibitor N-terminal 57 230 IPR032861 -
Cca03g00724 419 Gene3D Acid Proteases 236 419 IPR021109 -
Cca03g00724 419 Gene3D Acid Proteases 33 230 IPR021109 -
Cca03g00724 419 SUPERFAMILY Acid proteases 54 419 IPR021109 -
Cca03g00724 419 PANTHER OS07G0603500 PROTEIN-RELATED 47 408 - -
Cca03g00724 419 Pfam Xylanase inhibitor C-terminal 260 415 IPR032799 -
Cca03g00724 419 ProSiteProfiles Peptidase family A1 domain profile. 57 415 IPR033121 -
Cca03g00724 419 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 47 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00724 Cca-Chr3 14220415 14221674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00724 48 419 Miscellaneous Gene Families AT1G77480 21.662 1.62e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00724 - K22683 gmx:102668643 639.417