Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00699 ATGGTGACGGTGATTCCTTCGTGTGCTGCACTTGGGGATTTGAAAATGGGAGTGGTTCTTCATGGTTTGGCTTTTAAAATTGGCGTTAGTGAGGAAGTGATGGTGAATAATTCCCTTGTGGACATGTATTCCAAATGTGGTTGCTTGAGGGAGGCGCGAGTTTTGTTTGATATGAATGGTGGGAAGAGTGTTGTTTCTTGGAATACTATGATTGGGGGATACTCCAAGGAAGGGGATTTTGGTGGAGCGTTTGAGCTGCTGCGAGATATGCAGAGGGAAGAGGGGGTCAAGGTGAATGAGGTGACGGTGTTACATGTTCTGCCAGCGTGTTCGGAAGATCTTCAGCTGCTGAGCTTGAAGGAAATTCATGGTTATGCTTTCAGGCATGGATTTCAGAATGATGAATTGGTGGCCAATGCTTTTGTTGCTGCTTATGCGAAGTGCAGTTCGCTGGATTGTGCTGAGCGTGTCTTCTGTAGTTTGGAAGGAAAAACTGTGAGCTCTTGGAATGCATTGATTGGTGCTCTTGCTCAAAATGGTTTTCCCAGAAAGGCTTTAGATTTGTACCTTGTGATGATGAATTCTGGGTTGGATCCTGATTGGTTTACAATTGGTAGCCTTATTTTAGCTTGTGCACACTTGAAATTCCTTCGGTGTGGCAAAGAGATTCATGGTTTTATGTTGCGGAATGGTTTAGAGTTGGATGAATTTATCGGGATATCGTTGCTGTCACTTTATGTTAGGTGTGACAATATGTTACCAGCGAAGTTAATTTTTGATAAGATGCTAAATAAAAGTTTAGTATGCTGGAATACAATGATTACTGGTTTTTCTCAGAATGAACTTCCCTGTGAAGCCCTTGATACATTTCGGCAAATGCTTTTGAGTGGGATTAAGCCTCAAGAGATTGCTGTAATGGGTGTTCTTGGGGCTTGTGCACAGGTGTCAGCATTTCGGCTGGGGAAAGAAGTTCACTCCTTTGCACTCAAAGCTCATCTCTCGGAGGACACCTTTGTTACTTGTGCATTAATAGACATGTATGCTAAATGTGGATGCATGGAACAATCTCGGAACCTTTTTGACAGGGTGAATGAGAAGGATGAAGCACTATGGAATGTTATAATTGCAGGATATGGAATTCACGGGCATGGGCTGAAGGCTATTGAGCTGTTTGAATTAATGCAAAATAAAGGCTGCAGGCCAGATTCCTTTACATTTCTGGGAGTGCTAATTGCATGTAACCATGCTGGCTTGGTAACAGAAGGATTAAAATATCTCGGCCAGATGCAGAGTTTCTATGGCGTAAAGCCAAAGTTAGAGCATTATGCATGTGTGGTGGATATGCTTGGTCGGGCAGGACATCTGAATGAAGCTATAAAACTTGTAAATCAGATGCCAGATGAACCAGATTCAGGAATATGGAGTTCATTGCTCAGTTCCTGTAGGAATTACGGGGATTTAGATATTGGAGAGGAAGTTTCCAAAAAGTTATTAGAGTTGGAACCAGATAAAGCTGAGAATTATGTATTACTATCAAACTTTTATGCAGGATTAGGAAAATGGGATAAGGTGAGAAAGGTACGGCAGAAAATGAAGGAGAATGGACTTCATAAAGATGCTGGCTGTAGTTGGATTGAAATAGGAGGAAAGGTTTATAGATTTGTTGTTGGTGATGGATCACTTTTGGAATCAAAAAAGGTTCAGCNNNNNNNNNNNNNNNNNNTTCAGCAGGCTTGGATTCAATTGGAGAAAAAAATAAGCAAAATTGGATATAAACCTGACACAAGTTGTGTGCTCCATGAACTGGAAGAAGAGGAAAAGATTAAGATACTAAAGAACCATAGTGAGAAGCTTGCAATTTCTTATGGTCTATTAAATACGGCTAAAGGTACAACTTTGAGGATTTGCAAAAATCTACGGATATGTGTAGATTGTCACAATGCAATTAAATTAGTATCAAAGGTTGTTGAACGAGATATTATTTTAAGGGACAACAAGCGCTTTCATCATTTCAAAAACGGATTTTGTACTTGTGGAGATTACTGGTAG 2049 0.4026 MVTVIPSCAALGDLKMGVVLHGLAFKIGVSEEVMVNNSLVDMYSKCGCLREARVLFDMNGGKSVVSWNTMIGGYSKEGDFGGAFELLRDMQREEGVKVNEVTVLHVLPACSEDLQLLSLKEIHGYAFRHGFQNDELVANAFVAAYAKCSSLDCAERVFCSLEGKTVSSWNALIGALAQNGFPRKALDLYLVMMNSGLDPDWFTIGSLILACAHLKFLRCGKEIHGFMLRNGLELDEFIGISLLSLYVRCDNMLPAKLIFDKMLNKSLVCWNTMITGFSQNELPCEALDTFRQMLLSGIKPQEIAVMGVLGACAQVSAFRLGKEVHSFALKAHLSEDTFVTCALIDMYAKCGCMEQSRNLFDRVNEKDEALWNVIIAGYGIHGHGLKAIELFELMQNKGCRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQSFYGVKPKLEHYACVVDMLGRAGHLNEAIKLVNQMPDEPDSGIWSSLLSSCRNYGDLDIGEEVSKKLLELEPDKAENYVLLSNFYAGLGKWDKVRKVRQKMKENGLHKDAGCSWIEIGGKVYRFVVGDGSLLESKKVQXXXXXXXQQAWIQLEKKISKIGYKPDTSCVLHELEEEEKIKILKNHSEKLAISYGLLNTAKGTTLRICKNLRICVDCHNAIKLVSKVVERDIILRDNKRFHHFKNGFCTCGDYW 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00699 682 Gene3D Tetratricopeptide repeat domain 215 334 IPR011990 GO:0005515
Cca03g00699 682 Gene3D Tetratricopeptide repeat domain 339 552 IPR011990 GO:0005515
Cca03g00699 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 93 IPR002885 -
Cca03g00699 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cca03g00699 682 TIGRFAM PPR: pentatricopeptide repeat domain 65 99 IPR002885 -
Cca03g00699 682 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Cca03g00699 682 TIGRFAM PPR: pentatricopeptide repeat domain 168 201 IPR002885 -
Cca03g00699 682 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Cca03g00699 682 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 114 669 - -
Cca03g00699 682 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 1 111 - -
Cca03g00699 682 Pfam E motif 484 546 IPR046848 -
Cca03g00699 682 Pfam PPR repeat 37 57 IPR002885 -
Cca03g00699 682 Pfam PPR repeat 442 467 IPR002885 -
Cca03g00699 682 Pfam PPR repeat 268 298 IPR002885 -
Cca03g00699 682 Pfam PPR repeat 342 365 IPR002885 -
Cca03g00699 682 Pfam DYW family of nucleic acid deaminases 590 682 IPR032867 GO:0008270
Cca03g00699 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cca03g00699 682 Pfam PPR repeat family 165 212 IPR002885 -
Cca03g00699 682 Pfam PPR repeat family 367 412 IPR002885 -
Cca03g00699 682 Pfam PPR repeat family 62 109 IPR002885 -
Cca03g00699 682 Gene3D Tetratricopeptide repeat domain 120 214 IPR011990 GO:0005515
Cca03g00699 682 Gene3D Tetratricopeptide repeat domain 1 119 IPR011990 GO:0005515
Cca03g00699 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Cca03g00699 682 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 114 669 - -
Cca03g00699 682 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00699 Cca-Chr3 13124117 13126165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00699 2 682 Glycoside Hydrolase AT3G49170 36.842 2.08e-143 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00699 - - ccaj:109818232 1358.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00699 03 13124117 13126165 Cca03g00699 03 13124117 13126165 ECH