Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00697 ATGAAGGTTCGGTCGCTGAAGCTGAGGGAGGCCCACGGCGGCAAGGGTGGCCGCGCCTCCTTCTGCTCCGTCGTGTGGGACCAGAAGGCGCAACATTTGGTCACCGCCTCCTCCTCCGACGTCTCCATCTGCATCCACGACCCCCTTTTCCCCTCTCTCACTCCCAAAACCCTCCGCCACCACCGCGACGGCGTCACCGCCTTGGCGCTCAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCCTCGATCACTCCGTCAAGCTCTACAAGTTCCCTAGTGGTGAGTTTGAGACAAATATTACTAGATTTACACTGCCAATACGTTCCCTGGCGTTTAACAAATCAGGGAGCATGCTGGCTGCGGCTGGTGATGACGAGGGAATCAAGCTAATAAACACAGTTGATGGTTCCATTGCAAGGGTTCTCAAAGGACATAAAGGGTCTGTCACTGGCTTAGCTTTTGACCCTAATGGCGAATACTTAGCCTCTCTGGATTCAACTGGAACAGTTATATTGTGGGAACTTCACTCTGGGAGAATTGTTCATAACCTCGAAGGCATAGCTCCTGACACGGGGGTGGATGTTTCTACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCTGTTCCTGGGTTGAGAAATGATGTGGTAATGTATGATAGGGATACTGCTGAGAAGTTGTTTTCTTTGAGAGGTGATCATATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGGGAGTACATTGCTACCTCTGGTTTAGACAAGCAGGTTCTGATCTGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAAGTTTGATGAAAGAGTATGTTGTATGGCGTGGAAGCCAATTGAGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATTTGGGAGAATGTTATTCCGTCGTCTATGAAGTCTCCAACTGAGGATATACCTGCGCAATACAAGAGCAATGGGGTTCTTTTATTTGATGAGGAGGATCCTGAAAATAGTGTAAGTGGAAGCATGAGTGATATTGGTGAAAATAGTAATGAGGTGTCTGAGCCACCTAGCAAGAAAAGATTGCGTAAACAGACTTTTAGTGAGGAAAATTTAGGTGAGGATGAAGGAGAGGAAATTGATTTGTATCCGAAGGCTGATTCTCACAAAAAACGAAATCGATCAAGCAAGGAAAATTTGGATAGTGGGAATATGGGATTTAGAAGCACCATGGTAACATCTAAGGCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCGTTTCTTATGCTACAATATGCTTGGATGTATAACTTCTATTGAACATGATGGATACTGCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACCGATCATTTTGGATTTACAATGGCGGCATTGAACGAGAATGGGAGCGTCTTTGCAAATCCTTGCAAGGGAGAGAACAACATGAGCACTCTCATGTATCGCCCATTTGGTAGTTGGGCCAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGCTGCTTGGGTTGCTGCAGTAACTAGTTTTAATTATCTTCGCATCTTTTCTGAGGGTGGTTTGCAGAGACATGTGATTTCGCTAGACGGGCCAGTGGTGACCGCATCCGGTTTTAAGGATAAGCTTGCAGTTGTGACTCATGCTTCTGATTGCCTCCCCTCAAATGATCAGATGTTAGAGTTTAGAGTATTTAATATTCCTCATGGGGTCCAACCCCTTCGAGGTCGCTTGCCACTATCTCCTGGTTCATCCCTAAGTTGGATTGGGTTTAGTGAAGAAGGCCAACTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCCAATTTGGTGGTAGCTGGATCCCACTCTTCAGTGCTGTTAAAGAGAAGAAGCCAGATGAAAACTATTGGGTGACGGGGTTGAATGAAAGCAAGTTATTTTGTGTGGTGTGCAAAAAGCCTGACGAATTCCCTCAGGTGATGCCTAAGCCAATTCTCACTCTGCTGAGTCTTTCTTTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCTCATGAAAACGAGTTTATGATGAACAGCTTGCATCACTTTGAGATTCAGAAAAGAATGGAGGAAATGGATTCTGTGGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAAATGCATACTGAGGCTTATAGCATCCTGCTGCCACAGTGATAAGCTTGTGCGAGCTACAGAACTTGTGAAGCTTTTGTCTCTGGAAAAATCAATGAGAGGAGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAACTTAGCCGAAATGTTCAGCAGCATATTGGAGGAAAGGCTACATGATGAAGCCAAAAGAACTGCGGAAACCAACATCAAAGAAAACTGTGTTGCACCTATTACAGCTGATGCCCTTCATAGCGGAAGCAAGGCCCCAACTCACTCTGAAACATTAAATGCAGTTACCAAGTCATCACCACCAAACTTATCTGCTCCATTGTTTAAAAAGAAAGAGAAAACACAAGATGGTGCTAAAGCTGAAATAAATAAGACCACAATGGTAAATGAAACTCTGAAAGCAAAACAAACAAGGGATGAAACAAGTAACAAGGTGGTGCAACAAACTCCTCATTCACATGATTCCTCTACGAAGTCGTCAAATAAGAATGGGCTTAATAAGTCAGAGGCTAGTTTGGGACAATCAAATCGACCGTCCAATCCATTTTTGAAGTCTACTATCAAGTGA 2859 0.4463 MKVRSLKLREAHGGKGGRASFCSVVWDQKAQHLVTASSSDVSICIHDPLFPSLTPKTLRHHRDGVTALALSPNSTCLASGSLDHSVKLYKFPSGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGSVTGLAFDPNGEYLASLDSTGTVILWELHSGRIVHNLEGIAPDTGVDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGEYIATSGLDKQVLIWDVNRKQDIDRQKFDERVCCMAWKPIENALAVIDVMGKYGIWENVIPSSMKSPTEDIPAQYKSNGVLLFDEEDPENSVSGSMSDIGENSNEVSEPPSKKRLRKQTFSEENLGEDEGEEIDLYPKADSHKKRNRSSKENLDSGNMGFRSTMVTSKAKMQEAFQPGSTPVQPGKRRFLCYNMLGCITSIEHDGYCHIEIDFHDTGSTPRVPSMTDHFGFTMAALNENGSVFANPCKGENNMSTLMYRPFGSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSFNYLRIFSEGGLQRHVISLDGPVVTASGFKDKLAVVTHASDCLPSNDQMLEFRVFNIPHGVQPLRGRLPLSPGSSLSWIGFSEEGQLCSYDSKGVLRSYTSQFGGSWIPLFSAVKEKKPDENYWVTGLNESKLFCVVCKKPDEFPQVMPKPILTLLSLSFPLASSDLGSEAHENEFMMNSLHHFEIQKRMEEMDSVGLDTTSLDDDAFNLEAAQDKCILRLIASCCHSDKLVRATELVKLLSLEKSMRGAIKLVTALKLPNLAEMFSSILEERLHDEAKRTAETNIKENCVAPITADALHSGSKAPTHSETLNAVTKSSPPNLSAPLFKKKEKTQDGAKAEINKTTMVNETLKAKQTRDETSNKVVQQTPHSHDSSTKSSNKNGLNKSEASLGQSNRPSNPFLKSTIK 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00697 952 Pfam Minichromosome loss protein, Mcl1, middle region 424 706 IPR022100 -
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Cca03g00697 952 MobiDBLite consensus disorder prediction 381 401 - -
Cca03g00697 952 CDD WD40 15 296 - -
Cca03g00697 952 SUPERFAMILY WD40 repeat-like 18 307 IPR036322 GO:0005515
Cca03g00697 952 MobiDBLite consensus disorder prediction 905 952 - -
Cca03g00697 952 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Cca03g00697 952 MobiDBLite consensus disorder prediction 336 409 - -
Cca03g00697 952 MobiDBLite consensus disorder prediction 357 374 - -
Cca03g00697 952 MobiDBLite consensus disorder prediction 844 952 - -
Cca03g00697 952 Gene3D - 196 308 IPR015943 GO:0005515
Cca03g00697 952 Gene3D - 2 99 IPR015943 GO:0005515
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Cca03g00697 952 MobiDBLite consensus disorder prediction 846 867 - -
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Cca03g00697 952 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 936 - -
Cca03g00697 952 SMART WD40_4 2 47 IPR001680 GO:0005515
Cca03g00697 952 SMART WD40_4 135 174 IPR001680 GO:0005515
Cca03g00697 952 SMART WD40_4 226 266 IPR001680 GO:0005515
Cca03g00697 952 SMART WD40_4 177 223 IPR001680 GO:0005515
Cca03g00697 952 SMART WD40_4 51 90 IPR001680 GO:0005515
Cca03g00697 952 SMART WD40_4 93 132 IPR001680 GO:0005515
Cca03g00697 952 MobiDBLite consensus disorder prediction 340 356 - -
Cca03g00697 952 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Cca03g00697 952 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Cca03g00697 952 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Cca03g00697 952 Gene3D - 100 195 IPR015943 GO:0005515
Cca03g00697 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 95 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00697 57 272 Miscellaneous Gene Families AT5G08390 21.560 1.91e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00697 K11274 - gmx:100809300 1603.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00697 03 13057710 13063023 Cca03g00697 03 13057710 13063023 ECH