Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00690 ATGGCAGAGAACGAAATCCAAATCCAAATCCGCACCCTAACCGGCGAATCCACCACCGTTCCCATCACTCCGGCCACCACCGTCCACCACCTCAAGCTCCTCCTCTCCCACTCCTTCCCCCCCGCCACCACCTCCCCCAACTTCCACCTCTTCTTCAAGGGTCACAAACTGCGACCGCACACTCAACTCGCCACTTTCCCCATCCAACGCACCGAGTTTCTCGTCCTCGTTCCCTTCGCCAAGAAGGAGAAGGAACCTCCTCCACCGCCCCAACCGGTTACCGCTCCAGCCTCCTCCTCTCTCGCCGACTCCACCTGGTCCTCCATAATGGACGATTTGTCGCACTTGCGCCACGCCACCGGGAGTTCCGGTAACGCGTCGGAGGCGCCAACCGAAAAGCGTTTGGGCCCCGAGAAGCCCATAGAGCTTCCGTATCATCTCATATTGAACACgctgcgggacgacggcggcggcgacggcgCTCTCGGCGACCACAATTGCGAGGTTTTCGCGAAGGTCTTGGAGTCGGTGAGTTGTTTATCGGACCTGCCTCTCGGACACTGCAAGCTGTTGAGACGAGCTCGTTCGAAAGGAGGGAGAGGATGTGTTGGTGATGGTGCCGCGTGCTTGTGTCCACCGTGGCTGAAGATTGCAGTGAAGGCGTTTGCTTTTGTTAATGTTTTTTCAGCGTTTCTTTATTTGCAGCGCCGGAGGCTGACCTCGATTCTCATGGAAAAGGCGTTTAATGAGCTTGCGAAGTTTGGGGTTGAACTTGGCGTTGGTGACATAGAGCATCTTTCGCTTCTTTGTCCTCATCTGGTATGTTTTGGTGATGATGTAGACAAGACTAGTTTTGGTGATGTTATTGTGATTGTTAACTGTTCAACTTGCATTGAAGATCAAAGTGAAGAGAATCCTAAAAGAGTGCGCAAGTGGATGTATGTTTCAAAGATTGTCAGTACATTGAAGAGAAGGGACAGTTCTTTCCGGAAACATGTCGGGTGGGCTTTTGAGCAGCTGCCGTTTGAATTTGGAGATGAGATGACTGTGGGAATTTCCATGGAAGAGCTTCTAGCAGCAGTCAAGGGCTGTGATTTTGTTGGAAAAGAAGACAAATCAAAGCGTGTAAAGAGAAGCAAAACTACCTCAAAACCTGACTTAAACCATACTGGGTGTCATGACACAAAGTCTTTACTAGCTCTAGACATGATTGATCATCTTAAGAAAGGCATTGGATCCGAAGGACAGATTGTGCATATCGAAGACATATGTGCCAGAAAAGCAATTTACAGTGAGTTCCCAATTGAACTATCTGAGAAAATGAGATCTGCACTAAAGTGTATTGGAGTTTCCAAATTTTACAGTCACCAGGCAGAGTCTATACAAGCATCCCTTCATGGCAAAAATGTTGTGGTGGCTACAATGACATCTAGTGGTAAATCCCTTTGCTATAACCTACCAGTTCTTGAGGTTTTGTTCAAGGATTCATCTTCATGTGCTCTATACATATTTCCCACAAAGGCATTGGCTCAAGATCAACTAAGAGCTTTGTTACGCATGAGTAAAGGATTTGATATAGATTTCAATATTGGTATATATGATGGTGACACTTCTCTCAGTGAGAGGACGTGGCTACGTGACAATTCTAGATTGTTGATCACAAATCCGGATATGTTACACATATCAATCTTGCCCCACCATCGACAATTTAGTCGGATTTTATCAAACCTAAGGTTTGTGGTAATTGATGAAACTCATACTTACAAGGGAGCATTTGGATGTCATACTGCGCTAATATTGAGGAGGCTAAAACGACTCTGTTCACATGTATATGGATCTGTTCCTTCTTTTGTTTTTTCTACCGCAACTTCTGCAAATCCTCGGGAGCATTCCATGGAACTAGCAAATTTATCTACGCTGGAGCTATTTCAAAATGATGGAAGTCCATCTGCTAGGAAACTTTTTGTCCTTTGGAATCCTGCATTGCGTCCAAAAGCTATCATTAAAAAAGCTCAGTTTGCTATGAGTACTGATGAGATTGCAGATGAAAGTGTTAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCACGCCTTTTTGCAGAAATGGTTCAGCATGGTCTTCGCTGTATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTTGTTTTATCCTATACACGTGAGATTCTTCATGAGACAGCCCCACATCTGGTGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGGAGAAAAATAGAGAGTTCATTTTTTGGTGGTAAAATATGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGAGAAATTGATGCCACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTGTGGCAACAAGCGGGTAGAGGTGGGAGGAGAAATAGACCATCACTTGCTGTCTATGTTGCATTTGGTGGGCCTCTTGATCAATACTTCATGAAACATCCCAAGAAACTTTTTGAAAGACCAATTGAATGTTGTCATGTTGATTCCCAAAACAAGCAGGTTCTTGAACAACATTTGGCCTGTGCAGCTCATGAACACCCTCTGAATGTGAGCTATGATGAGCAATATTTTGGTCCTTGCTTGGAGAGTGTTATAATTTCTCTAAAAGCTAGAGGATACTTGAGTTCTGCTCTATCATCTGATTCTTCTAAAATATGGAACTACATTGGTCCTGAGAAATTACCTTCACATGTTGTCAATATCCGAGCAATAGAAACTGTAAGATACAGTGTTGTAGATCTGAAAAAAAATGAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCATTCTTTCAGGTTGTATATGAAGGTGCTGTGTATATGTGCCAGGGGAAAACTTATTTGGTTGAAAAATTAGATCTATCCAACAAAACTGCTTTCTGCAAAGAGGCTGATCTAAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAATCAAGGTAGAAACCAACATGTTTCTGAAATCAAATGCCCGGGCTGATGTATGCAAAGTAACAACTACTTGGTTTGGCTTTTATCGTATTTGGAGAGGAAGCAATCAAATCTTTGATACTGTTGACCTTGCACTTCCTCAATACTCGTACGAGTCACAGGCAGTTTGGGTTCCTGTGCCACAGCCAATAAAAGAAGCAGTAACCAAGCAAAATTATGATTTCCGAGGAGGCTTGCATGCTGCTTCACATGCAATTTTACATGTCGTGCCTTTACATATCACATGCAACTTGTCTGACTTGGCTCCTGAGTGTCCAAACCCTCATGATAGCCGTTATTACCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGGTGTGGAATTTCAGTACAGGTTCAACCTTATTTCACAAAGTTTCTGGCAGCTGCACTAGAGCTTCTCACATGTTGCTGCTGCTCAGCGGAAGTAGGTTGCCCTAATTGTGTTCAGAGCTTTGCTTGCCAAGAGTATAACGAGGTTTTACACAAGGATGCTGCCATCGTGATCATCAAGGGTATTCTGGATGCAGGGAACTAG 3594 0.4329 MAENEIQIQIRTLTGESTTVPITPATTVHHLKLLLSHSFPPATTSPNFHLFFKGHKLRPHTQLATFPIQRTEFLVLVPFAKKEKEPPPPPQPVTAPASSSLADSTWSSIMDDLSHLRHATGSSGNASEAPTEKRLGPEKPIELPYHLILNTLRDDGGGDGALGDHNCEVFAKVLESVSCLSDLPLGHCKLLRRARSKGGRGCVGDGAACLCPPWLKIAVKAFAFVNVFSAFLYLQRRRLTSILMEKAFNELAKFGVELGVGDIEHLSLLCPHLVCFGDDVDKTSFGDVIVIVNCSTCIEDQSEENPKRVRKWMYVSKIVSTLKRRDSSFRKHVGWAFEQLPFEFGDEMTVGISMEELLAAVKGCDFVGKEDKSKRVKRSKTTSKPDLNHTGCHDTKSLLALDMIDHLKKGIGSEGQIVHIEDICARKAIYSEFPIELSEKMRSALKCIGVSKFYSHQAESIQASLHGKNVVVATMTSSGKSLCYNLPVLEVLFKDSSSCALYIFPTKALAQDQLRALLRMSKGFDIDFNIGIYDGDTSLSERTWLRDNSRLLITNPDMLHISILPHHRQFSRILSNLRFVVIDETHTYKGAFGCHTALILRRLKRLCSHVYGSVPSFVFSTATSANPREHSMELANLSTLELFQNDGSPSARKLFVLWNPALRPKAIIKKAQFAMSTDEIADESVNFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPHLVDSICAYRGGYIAEERRKIESSFFGGKICGVAATNALELGIDVGEIDATLHLGFPGSIASLWQQAGRGGRRNRPSLAVYVAFGGPLDQYFMKHPKKLFERPIECCHVDSQNKQVLEQHLACAAHEHPLNVSYDEQYFGPCLESVIISLKARGYLSSALSSDSSKIWNYIGPEKLPSHVVNIRAIETVRYSVVDLKKNEVLEEIEESKAFFQVVYEGAVYMCQGKTYLVEKLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPIKVETNMFLKSNARADVCKVTTTWFGFYRIWRGSNQIFDTVDLALPQYSYESQAVWVPVPQPIKEAVTKQNYDFRGGLHAASHAILHVVPLHITCNLSDLAPECPNPHDSRYYPERILIYDQHPGGCGISVQVQPYFTKFLAAALELLTCCCCSAEVGCPNCVQSFACQEYNEVLHKDAAIVIIKGILDAGN 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00690 1197 Gene3D - 427 644 IPR027417 -
Cca03g00690 1197 Gene3D - 688 870 IPR027417 -
Cca03g00690 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 851 IPR001650 -
Cca03g00690 1197 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1195 - -
Cca03g00690 1197 Pfam MrfA Zn-binding domain 1086 1168 IPR018973 -
Cca03g00690 1197 Gene3D - 6 95 - -
Cca03g00690 1197 SUPERFAMILY Ubiquitin-like 4 91 IPR029071 -
Cca03g00690 1197 SMART helicmild6 729 810 IPR001650 -
Cca03g00690 1197 MobiDBLite consensus disorder prediction 117 137 - -
Cca03g00690 1197 Pfam Helicase conserved C-terminal domain 702 809 IPR001650 -
Cca03g00690 1197 CDD Ubl_ubiquitin_like 8 77 - -
Cca03g00690 1197 Pfam DEAD/DEAH box helicase 455 624 IPR011545 GO:0003676|GO:0005524
Cca03g00690 1197 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515
Cca03g00690 1197 SMART ultradead3 449 655 IPR014001 -
Cca03g00690 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 461 642 IPR014001 -
Cca03g00690 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 817 IPR027417 -
Cca03g00690 1197 CDD DEXHc_Hrq1-like 453 634 - -
Cca03g00690 1197 CDD SF2_C_Hrq 655 819 - -
Cca03g00690 1197 MobiDBLite consensus disorder prediction 82 101 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00690 - - gmx:100819522 2011.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00690 03 12639344 12652302 Cca03g00690 03 12639344 12652302 ECH