Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00677 ATGGATAACAGTAGCTCGGAGCAGACGGTGCAAGATGGCAAACTCTACAGACACCTCAATTCTCTCATCGTCGCTCATCTTCGCGACAACAATCTCACTCAGGCAAGCCCAGCTGCAAGTGCTGTTGCTTCAGCAACATTGACTCCACTGAATGTAGAAGCTCCACCTAACAAGCTTCTCGACCTGGTTGCTAAGGGCCTTGCAGTGGAAAAAGATGGCACCACAAGAGGCACTTCCGCTTCACCCTTTCGCGATTTCGCCGCGCCACTGCCCCTGCCTCACACTGCAGCCGTTGATTTCAGGCAAACTTTTGAAACCACATTTCCTGATATGAAAGGTTCCTCAAAGAGCTTCCCAAAGCATGAAACGCGACACCTTTCGGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCTGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTATCAGATGCAAAGGATGGTCCTGTGCGGCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATCTTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCGAAAACAAATGCAAAGAGAGCGTACAGGGTGATCCAGCAGGACACACACAATGTTCGTTCTGTATCTTTTCATCCCTCTGGGGACTTTCTGTTGGCAGGGACTGATCATGCAATTCCCCATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCGGCAAATATCCCAGAGACTAACCCAAATGGAGCCATAAATCAGGTCAGATATTCTTGTACAGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGATTGTGGGATGGCATCACTGCCTCTTGTGTGCGCTCAATAACTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAAATTTTACTAAAGATCAAAGGTTTGTTCTGTCCTGTGGAAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAGTCAAACAATATCTTGGGGCCATGCATACCCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTCATTCTATCCATAGATGAGCTGAACAATGAGATCGTTATCTGGGATGCGATGACAACAGAAAAAGTAGCAAAGTGGCCATCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTCATTTCCTGTGGAACTGATAGGTCAGTTAGGTTCTGGAAGGAAACTGTATAA 1323 0.4437 MDNSSSEQTVQDGKLYRHLNSLIVAHLRDNNLTQASPAASAVASATLTPLNVEAPPNKLLDLVAKGLAVEKDGTTRGTSASPFRDFAAPLPLPHTAAVDFRQTFETTFPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLSDAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPETNPNGAINQVRYSCTGAMYVTASKDGAIRLWDGITASCVRSITGAHGTAEATSANFTKDQRFVLSCGKDSTIKLWEVGSGRLVKQYLGAMHTQLRCQAIFNETEEFILSIDELNNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00677 440 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Cca03g00677 440 Gene3D - 107 270 IPR015943 GO:0005515
Cca03g00677 440 SMART WD40_4 397 437 IPR001680 GO:0005515
Cca03g00677 440 SMART WD40_4 119 158 IPR001680 GO:0005515
Cca03g00677 440 SMART WD40_4 262 305 IPR001680 GO:0005515
Cca03g00677 440 SMART WD40_4 220 259 IPR001680 GO:0005515
Cca03g00677 440 SMART WD40_4 175 214 IPR001680 GO:0005515
Cca03g00677 440 SMART WD40_4 308 349 IPR001680 GO:0005515
Cca03g00677 440 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Cca03g00677 440 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Cca03g00677 440 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 216 - -
Cca03g00677 440 Pfam WD domain, G-beta repeat 231 254 IPR001680 GO:0005515
Cca03g00677 440 Pfam WD domain, G-beta repeat 123 157 IPR001680 GO:0005515
Cca03g00677 440 Pfam WD domain, G-beta repeat 310 348 IPR001680 GO:0005515
Cca03g00677 440 Pfam WD domain, G-beta repeat 278 305 IPR001680 GO:0005515
Cca03g00677 440 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Cca03g00677 440 Gene3D - 272 440 IPR015943 GO:0005515
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 167 IPR001680 GO:0005515
Cca03g00677 440 CDD WD40 122 437 - -
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Cca03g00677 440 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 439 IPR044633 GO:0005848|GO:0031124
Cca03g00677 440 SUPERFAMILY WD40 repeat-like 118 437 IPR036322 GO:0005515
Cca03g00677 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 358 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00677 179 436 Miscellaneous Gene Families AT5G08390 20.849 2.14e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00677 K14406 - gmx:100809908 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00677 03 12316997 12321321 Cca03g00677 03 12316997 12321321 ECH