Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00667 ATGGATGTGGTAAATGATTTGCATATGGAGCCTCCAGCAACAACCAATTCGGGAGGTTCTTTAACTAGTACAGAGGATGTAAATTCACCAGACAAGCAGAAAATGTCGAGAAAGAGAAAACAAGGTGATGTTGTTGAGCATGAAGGTGCTGATGACCCAGCAGTTGACTTCTCTGATAATAATCTATCTGTTAAAATCTACACAAGGAAAAAAGTGGTAAATTTCCATTGTAAGGAAAATAGTGGTTACACAAGTCCTGAAAATTGTAACAAGGAACCAACTATTCAGGATCATCATAAGGATAAATCAGAGCAATTTTCTGATGGACCATTGAGAGTTGGCTTGATGGATGGCGAGACGAAGCTTTCAATTGATCAAGTTACCTCTCAAAGTGGAGCTGCAGCTGAGGAAATAAAGTTGAGCGGTGACAACATTAATGAGCAAAGATTTATGACTACATCTTCTGTAGTAGATATTCCTGTGGAGCAGCTTGAAACAAACAGTAGACAGCTTGATCATACTGAGATTACAAGAAATGATCTGTCCTGTGCAGGTGATATTTCTGATTTAAGCTTAGACAGAGTAAGAGATGGTCATTTAAAGATTTCACAATTCTCACTAGACAGAAGTGTTGCTGGCAACTCAAAGAATAAGCTTCTCATCCTTGATGTGAATGGACTCCTTGCTGATTTTGTCAGTGTCAGTGATGCTCGTATAAGATATAATGATCCAGAGCCAGATATTTTTCTTAATGGGAAAAAAGTCTACAAGAGGCCCTTTTGTGATGATTTCCTACAGTTTTGTTTTGACAGATTTCATGTGGGAGTATGGTCATCTAGAGCCAAGAGGAATGTTGATGAGGCAATCGCATTTCTTATGGGGAAGTCTGCATCCAAACTGCTCTTCTGTTGGAATCAGTCCCACTGCACTAGAACACGATTCACTACTGTTGAGAATAAAGAGAAGCCCCTTGTGTTGAAGGAACTTAGAAAGTTGTGGGAAAAGGAAGACCCTGATCTACCATGGGAGAAGGGAGAGTTTAATGAATCAAACACATTATTATTGGATGATTCCCCTTACAAGGCATTAATGAATCCTAAGCATACGGCAATATTTCCTTGTTCTTACCGGTACTATCACACCAGAGACTCAGAATTAGGATCAGGAGGTGATCTTCGGGTTTATCTAGAAGGGCTGGTTAAGGCTGAGAATGTGCAAAAGCACGTGGCGGAAAATCCGTTTGGCCAACGGCCCATAAGAGAAACAAATCCATCCTGGCGTTACTATAGCAAAGTTATAGATGCAGTTAAAAGAAGCCAAAAGGCTAGGAGCTCATGA 1338 0.4021 MDVVNDLHMEPPATTNSGGSLTSTEDVNSPDKQKMSRKRKQGDVVEHEGADDPAVDFSDNNLSVKIYTRKKVVNFHCKENSGYTSPENCNKEPTIQDHHKDKSEQFSDGPLRVGLMDGETKLSIDQVTSQSGAAAEEIKLSGDNINEQRFMTTSSVVDIPVEQLETNSRQLDHTEITRNDLSCAGDISDLSLDRVRDGHLKISQFSLDRSVAGNSKNKLLILDVNGLLADFVSVSDARIRYNDPEPDIFLNGKKVYKRPFCDDFLQFCFDRFHVGVWSSRAKRNVDEAIAFLMGKSASKLLFCWNQSHCTRTRFTTVENKEKPLVLKELRKLWEKEDPDLPWEKGEFNESNTLLLDDSPYKALMNPKHTAIFPCSYRYYHTRDSELGSGGDLRVYLEGLVKAENVQKHVAENPFGQRPIRETNPSWRYYSKVIDAVKRSQKARSS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00667 445 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 58 441 - -
Cca03g00667 445 Pfam NLI interacting factor-like phosphatase 218 405 IPR004274 -
Cca03g00667 445 MobiDBLite consensus disorder prediction 92 107 - -
Cca03g00667 445 MobiDBLite consensus disorder prediction 82 109 - -
Cca03g00667 445 MobiDBLite consensus disorder prediction 1 53 - -
Cca03g00667 445 SMART forpap2 216 383 IPR004274 -
Cca03g00667 445 MobiDBLite consensus disorder prediction 30 53 - -
Cca03g00667 445 Gene3D - 192 414 IPR023214 -
Cca03g00667 445 ProSiteProfiles FCP1 homology domain profile. 213 399 IPR004274 -
Cca03g00667 445 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 58 441 - -
Cca03g00667 445 MobiDBLite consensus disorder prediction 10 29 - -
Cca03g00667 445 SUPERFAMILY HAD-like 215 408 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00667 Cca-Chr3 12193984 12198135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00667 - - ccaj:109813331 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00667 03 12193984 12198135 Cca03g00667 03 12193984 12198135 ECH