Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00653 ATGATGCATCCAGTGGATACCATTAAAACTCGATTACAAAGTCAAGCAATTCTAAATGGAATTCAGAACCAGAAGAACATATTGCAGATGGTCCAATCTGTCTGGCAGGTTGATGGATTAAAAGGATTTTACAGGGGTGTAGCACCTGGTATTATTGGATCTCTTGCAACTGGTGCAACATATTTTGGAGTCATAGAGTCCACAAAAAAGTGGATTGAGGATTCACATCCTAGCCTTCGGGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGAGACACTCTAGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGAACAATTACATCTTGGAGTTCTGTTGCTGTGAAGGATGGCGTTGCTATCAACTCTGGCACACAAATGTATGGTTATTATACAGGGATGTTCCATGCAGGCTGCTCAATATGGAAAACACAGGGCTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTTCCATTTGCTGGCCTAATGGTCATGTTCTATGAAGCTTTGAAAGATGCCAAAGAACAAGTAGAGCAAAGATGGATATCTAGCCCAAATTGGCACGTCAATAATTCAGTCGAGGGACTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTTACCACTCCTTTGGATGTCGTTAAAACAAGACTGCAAGTGCAGGGTTCAACTTTGAGGTATACTGGTTGGTTGGATGCAATTGGCAAAATATGGGCTACAGAAGGCATGAAAGGGATGTTTAGGGGTAGCATCCCCAGGATTACATGGTACATTCCAGCTTCGGCACTTACATTCATGGCTGTGGAATTTCTCAGGGGTCATTTTAAGGATAAGTCGCGAGATGTTGGCAGATTATTAGTAGACAAGAAATCTCTGCAGGGAGGTTGCTTAAAAGTTTCTGATTGA 954 0.4277 MMHPVDTIKTRLQSQAILNGIQNQKNILQMVQSVWQVDGLKGFYRGVAPGIIGSLATGATYFGVIESTKKWIEDSHPSLRGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTITSWSSVAVKDGVAINSGTQMYGYYTGMFHAGCSIWKTQGLKGLYAGYLSTLARDVPFAGLMVMFYEALKDAKEQVEQRWISSPNWHVNNSVEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYTGWLDAIGKIWATEGMKGMFRGSIPRITWYIPASALTFMAVEFLRGHFKDKSRDVGRLLVDKKSLQGGCLKVSD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00653 317 Gene3D Mitochondrial carrier domain 130 308 IPR023395 -
Cca03g00653 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 290 IPR018108 -
Cca03g00653 317 SUPERFAMILY Mitochondrial carrier 2 287 IPR023395 -
Cca03g00653 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 71 IPR018108 -
Cca03g00653 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 80 187 IPR018108 -
Cca03g00653 317 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 307 - -
Cca03g00653 317 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Cca03g00653 317 Pfam Mitochondrial carrier protein 82 186 IPR018108 -
Cca03g00653 317 Pfam Mitochondrial carrier protein 1 74 IPR018108 -
Cca03g00653 317 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 307 - -
Cca03g00653 317 Gene3D Mitochondrial carrier domain 1 129 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00653 Cca-Chr3 11699956 11705032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00653 1 288 EF-hand Containing Proteins AT2G35800 27.778 1.89e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00653 - - ccaj:109815969 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00653 03 11699956 11705032 Cca03g00653 03 11699956 11705032 ECH