Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00652 ATGCAGAGTGAAATTCAAGCAAGTGAAGGGTCGGCACGTATGCAGCAAATGAAGTTTTGGCATGTCTCGCACGACGACACAATGCAGCACCAACAACAACGCAAGGAAGATATCAACGCTGAACTTTGTGATATATGTGGTGATCGTGGATTTCCCGAAACAATTGTTACTTGCTCTAAATGCCATGTAAATCGGGAACATTGTTATTGCATGAGAATTAATACCTTAGAAATTCCTGAATATTGGCTTTGTGAGTCTTGCCAATCCAAGGGTGTTTCAAATTCACCACCCAGGGTGAATCAAGATATTGGTCAATGGGCTTCTAAAATGCAACGAGCTGTTAGAACAAGGAAAGTGAAGTTCCTTCATGAGGATGAAGTCATTAAACTTTCCTCAGGAAAAGCTTTTGTTGGATCGAAAAATGTCATTTCAAAGATTCCCTCCCTGCCTCCAAAACCAAATCCTCCCATATCATCCCCTAAATTACTTGGGAAGCTTCCAAGAAATGATGAAGTACAAAAGAAGCGAATGACTAATCAACATGCCTCTTGCTCATTGACAAAAGGACCACCAAAGGAGTTTATTGGAAAAATTCAGCTACCAATGGGTGGAGTGGTACCTGATAAAAAACTTCAAACCCATGATCTTCAAAAAGAAAAGCCTACAAAAAGGGCACCTTTTGAAGCTTTATCAACGATAAAATCTCCCCTCATTGTTGGTTCAGGTGGTATCCGTGTCGTTGATGCTGAATGTAACAAATCTAATACTGAAAAAATTGATCCTAAGAGTGTTAAGGAAATCTTAAACCTTGATCATAAATTTTTACCTTCATATCCTACCTGGAAGGGTCAATTCCAAATTCTTCAAACTGCTGCATCCGGTGAAGTTTTTGATGGGTTTGAGGCCCGACCACCATGCATTGTTAACCGGAAAGCATATGAATTTTCTAAAGAAATGCCATCAGTTCTTCAACTTAAGTCACTTCCTGCGTTGAATGTCATGACTGACATATTCCAGGATGATTCTCCTAAGCTTCAGGATATTGCATTGTACATCTTTCCATCAGATAATACTGAGAGGTCCAGAAAGAACATGAATACCATATTGAAATTTATGAATGATCAGAAATCAATGCTGAGAAGTTATATTAATGGAGTGGAGTTGCTGGTATTTACTTCAAATCAACTTGACATGAATACTAGCGGTGTTATTGCTGCAGTAAATGCTGGACACTTTCTGTGGGGAATCTTCCGCCACAGTAAAATTGATAAAGCTATTGGAAATGCACCTGACATGGAGCCAGTTGATATGGACATTGATATGATTGGAGGGAAGGACGTGGTGGGTAGAGTTGATCATATTAGAAATGATAAACCCAAGAGTGTTCCTTTGATGGATGTTCCTCCTGGCTTTGATGCACTAGTTTAA 1428 0.3936 MQSEIQASEGSARMQQMKFWHVSHDDTMQHQQQRKEDINAELCDICGDRGFPETIVTCSKCHVNREHCYCMRINTLEIPEYWLCESCQSKGVSNSPPRVNQDIGQWASKMQRAVRTRKVKFLHEDEVIKLSSGKAFVGSKNVISKIPSLPPKPNPPISSPKLLGKLPRNDEVQKKRMTNQHASCSLTKGPPKEFIGKIQLPMGGVVPDKKLQTHDLQKEKPTKRAPFEALSTIKSPLIVGSGGIRVVDAECNKSNTEKIDPKSVKEILNLDHKFLPSYPTWKGQFQILQTAASGEVFDGFEARPPCIVNRKAYEFSKEMPSVLQLKSLPALNVMTDIFQDDSPKLQDIALYIFPSDNTERSRKNMNTILKFMNDQKSMLRSYINGVELLVFTSNQLDMNTSGVIAAVNAGHFLWGIFRHSKIDKAIGNAPDMEPVDMDIDMIGGKDVVGRVDHIRNDKPKSVPLMDVPPGFDALV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00652 475 PANTHER ZINC ION-BINDING PROTEIN 39 461 - -
Cca03g00652 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 114 IPR013083 -
Cca03g00652 475 PANTHER - 39 461 - -
Cca03g00652 475 SUPERFAMILY FYVE/PHD zinc finger 37 93 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00652 Cca-Chr3 11678983 11691736 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00652 - - ccaj:109815968 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00652 03 11678983 11691736 Cca03g00652 03 11678983 11691736 ECH