Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00648 ATGTTGATTCAGATACCTCGCCTCACTAATTCTCTCAGAGACCCCTTCGATGTGGACCAGTACTATCTTCATCGCAAAACCATTCTCCACAACCAAAAGCCTCGCAACTCTGCGAGCTCGCTTGATGAATCGGAACTGGCGCGGAAGATTGTCTACGGGTGGGAAGAAGCTTCATCGGAAGTGCGGCAGGCCTACAAGCAGTTTATAGGAGCAGTGGTGGAGTTGGTTGACGGTGAAATGCGCTCCGAGGAGTTCCACGAGGTGGCGCTGACAGTATACCGTCTTTTTGGAAGGCCAATGGAGGAGGAGGATTATGTTGATAGAATTATTTCAGAAAAAAAGTTTGAATTACAAAAACTTATTGGACATACAGTTGCTGATGCCAAGTTGAAGCAAGTTGCATCTCTAGCACAGAGGCTTTTAAATTTGCAGCCAAGCAATAAAAACTCCACCATTTCTTTTGAAAGAAATGCAGATGCTGATGAAGAATTAGAATTTGGAGCTGATTTGTTTTTTCAAGCACCAGCTCGTTTCTTGGTTGATGTATCTTTGGATCATGGAGATATGATGGATTTTGAAAGCACTGTTTCATTAGAATTTCACAAAGAACAGTATGGTCTTACTGGCTCAACAGATCATTCTGTTGTTGATGGGGAAAAGTTCAACCTGACTTGGTTAAGAGAGGCATGTGATAAAATAATCAGGAATTGTAATTCACAGCTATCTCGAGATGAATTGGCAATGGCCATTTGTCGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGCGATGGTGCATTTGAAACTGTGCAAAATCTTTTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTGTTGGTATTGAAGTCTGATAAAAATGCTTCGAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGAAAAGCAAATAGACAAGCTCCGGCGCAAGGAGGAAAAGCGAAATAGACGGGGAATAGAACATGCTGGTGATGGTGACTTGTCTGCTCTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAAAAATTGTTTGATGAGATGATTGGTTCTGGAGATAGGTCCGAGTCAATAGCTGTTACTGCCCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTATGAAGAGGTTATTATTCCCCCCAAACCAACTGCACCATTGAAACCTGGAGAAAAGCTGATTGAGATCAAGGAGTTAGATGAATTTGCACAAGCTGCATTCCGTGGCTACAAATCACTAAATCGAATTCAGAGCAGGATATTTTCAACTGTTTATGGAACTAATGAGAATATTCTAGTGTGTGCTCCCACAGGAGCTGGGAAAACTAACATAGCTATGATTTCAATTCTACATGAGATTGGACAGCACTTCAGGGATGGTTACTTGCATAAAGATGAATTTAAGATAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTCACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTCAGAGAGCTTACCGGAGATATGCAACTGTCTAAAAATGAGCTCGAAGAAACTCAGATGATAGTGACAACACCCGAGAAATGGGATGTCATTACACGCAAGAGCAGTGACATGTCACTGTCAATGCTCGTAAAGCTCTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCTGTGATAGAGGCTCTAGTTGCTAGGACCCTACGGCAGGTGGAATCTACTCAGTCAATGATACGGATTGTGGGCCTTTCTGCCACTCTTCCTAATTACCTGGAGGTTGCACAATTTCTCAGGGTAAATCCAGACACGGGTCTTTTCTTCTTTGACTCTAGTTATCGTCCAGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAATTGTTGAATGATATATGCTATTCAAAGGTTGTTGATTCTCTTAGGCAAGGTCATCAGGCAATGGTATTTGTCCATTCACGAAAGGACACTGCAAAGACGGCTAATAAACTGGTTGAACTTGCACGAAGGAATGAGGATTTGGATATTTTTAGTAATAATACACATCCACAATATACCTTTATGAAGAAAGAAGTCATTAAGTCCAGAAACAAAGATCTTGTTGAGCTTTTTGAATTTGGTGTGGGTGTGCATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGGCTTTTCTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTCTGGCTTGGGGTGTCAATCTACCTGCACACACGGTTGTCATTAAGGGTACCCAATTATATGATCCAAAGGCTGGTGGGTGGCGAGACCTGGGTATGCTTGACGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAATTTGACAAAAGTGGTGAAGGTATCATAATTACATCTCATGACAAACTAGCATATTATCTGCGACTTCTGACAAGCCAACTCCCTATAGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACATATCTTTTCATAAGGATGAGGATGAATCCTTTGGCATATGGTATTGGGTGGGATGAGGTGATGGCAGATCCTGCTTTGAGTTCGAAGCAGAGATCTCTTGTAATTGATGCTGCACGTGCACTTGATAAAGCAAAAATGATGCGGTTTGACGAGAAAAGTGGCAATTTTTATTGTACCGAGCTTGGTCGCATTGCAAGCCATTTTTACATTCAATATTCCAGTGTTGAAACGTACAATGATATGTTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCATCTGAATTTGAGAATATTGCTGTTCGAGAAGAAGAACAGAATGAGCTAGAGATGTTGGCACGCACATCTTGTCCATTAGAAATCAAGGGTGGTCCTTCCAATAAGCATGGAAAGATTTCCATTTTGATTCAGTTGTACATATCTCGAGGTTCTATAGATTCTTTTTCTTTGGTGTCTGATGCTTCATATATCAGTGCAAGCTTGGCCCGAATAACACGGGCTTTATTTGAGATTTGTTTACGAAGAGGCTGGTGTGAGATGACTCTTTTCATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCACATCTACATCCTCTTAGACAATTTGACAAGGATCTTTCTACAGATATATTGAGGAAGCTTGAAGAACGTGGGGCTGACCTAGATCGCCTGTTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGATATGTGCCTGGAGGAAGGTTGGTCAAGCAATACCTAGGGTATTTTCCATCACTTCAATTATCAGCAACTGTGAGTCCAATTACCAGAACTGTGTTGAAGGTTGATTTGATCATTACGCATGTTTTCACATGGAAAGATCGATTTCATGGTACAGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCAGAACTCTTTACCTTGACAAAGCGAATGGCTAGGGGCGAACCTTACAAGCTTTCCTTCACTGTACCTATATTTGAGCCACATCCGCCACAATATTACATTCATGCTATTTCTGATTCCTGGCTTCATGCAGAGGCATTCTACACTATTACTTTTCACAATTTGCCATTGCCAGAGGCTCGTACTTCTCACACAGAACTCCTTGATTTAAAACCCCTTCCTGTGTCTTCCCTTAGCAACAGTGCTTATGAAGCATTATATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTCCATGTCTTGTATCACACGGACAACAATATTCTGTTAGGAGCTCCAACTGGGAGTGGAAAAACTATATCTGCTGAGCTTGCTATGCTTCGTCTTTTCAATACTCAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCTATTGTTAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACTGGAGACTATACTCCTGATTTGATGGCCCTCTTGTCGGCCGATATCATCATATCAACTCCTGAAAAGTGGGATGGAATAAGTCGTAATTGGCATACTCGTAGCTATGTCACAAAGGTTGGACTTATGATATTGGATGAGATTCACTTATTGGGAGCTGATCGTGGGCCTATCCTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCCCAAACAGAGCGTGCAGTACGGTTTGTAGGCCTTTCTACAGCACTGGCTAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAGATTGGGCTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCACTTGAAGGTTATCCTGGAAAGTATTACTGCCCAAGGATGAACAGTATGAACAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCTGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCTTCAGATGAACAATCGAGACAATTCCTTAATTTACCAGAAGAAGCCCTGCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACTTGAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGATATTGGTTTGTACCAGCACATTAGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTAATTATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACAGATATTTTGCAAATGATGGGTCGTGCTGGACGGCCACAATTTGATCAACATGGGAAAGCAGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTACAAAAAGTTTTTGTATGAACCCTTCCCTGTTGAAAGTAGTTTGAGGGAGCATTTACATGATCACATAAATGCTGAAATTATTTCTGGAACAATTTGCCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTATTTCGTAGACTGATGGTTAATCCGGCTTACTATGGATTAGAGAATGCTGATTCCGAATTTCTAAATTCATATTTGTCTAGCCTAGTGCAGAACACATTTGAGGATTTGGAAGACAGTGGATGCATAAAGATGGATGAAGACAAGGTGGAGGCTATGATGTTGGGTTCAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAGTGTTTTTGCATATCTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTCTGGATGACCCTCACATCAAAGCAATTCTTCTATTTGAGGCTCATTTTTCTCAACTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAATAGTGGTTGGCTTTCAAGCTCAATTACTTGTATGCGTCTTCTGCAAATGGTCATGCAGGGTTTGTGGTTCGACAAGGACTCTTCCTTATGGATGCTGCCATGCATGAATACAGATCTGATAAGTTCACTTAGCAAAAGGGGAATTTTCAATGTACAGGAATTACTAGACATTCCCAAAGCAGCATTGCAGACTATAACTGCAAATTTTCCATCTTCAAGATTGTATCAGGATCTACAGCATTTCCCTAATGTTAAAATGAAACTAAAAGTTCAGAGGAGGGACACTGATGGTGAGAAGTCCCACACATTACATATCAGATTAGAGAAGACCAATTCTAGACGACATTCTTCTAGAGCATTTGTACCTCGCTTTCCAAAGATAAAAGAGGAACAATGGTGGTTGGTTCTTGGTAATACCTCTACGTCTGAGCTATATGCTTTGAAAAGAGTTTCTTTTTCAGATCACTTATTTACCTCAATGAAATTGCCTCCAACTCCAGAGAATCTTCAGGGCATAAAGCTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCGTTGAAGAGCTTGTTGTATGTTAA 6222 0.4087 MLIQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPRNSASSLDESELARKIVYGWEEASSEVRQAYKQFIGAVVELVDGEMRSEEFHEVALTVYRLFGRPMEEEDYVDRIISEKKFELQKLIGHTVADAKLKQVASLAQRLLNLQPSNKNSTISFERNADADEELEFGADLFFQAPARFLVDVSLDHGDMMDFESTVSLEFHKEQYGLTGSTDHSVVDGEKFNLTWLREACDKIIRNCNSQLSRDELAMAICRVLNSEKPGEEIAGDLLDLVGDGAFETVQNLLLHRKEIVDSIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGIEHAGDGDLSALDFSSLLQASERKKLFDEMIGSGDRSESIAVTALPEGTVRKHFKGYEEVIIPPKPTAPLKPGEKLIEIKELDEFAQAAFRGYKSLNRIQSRIFSTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYSKVVDSLRQGHQAMVFVHSRKDTAKTANKLVELARRNEDLDIFSNNTHPQYTFMKKEVIKSRNKDLVELFEFGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNDMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLVSDASYISASLARITRALFEICLRRGWCEMTLFMLEYCKAVDRQVWPHLHPLRQFDKDLSTDILRKLEERGADLDRLFEMEEKDIGALIRYVPGGRLVKQYLGYFPSLQLSATVSPITRTVLKVDLIITHVFTWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLSNSAYEALYKFSHFNPIQTQTFHVLYHTDNNILLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEEALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENADSEFLNSYLSSLVQNTFEDLEDSGCIKMDEDKVEAMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKAILLFEAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDKDSSLWMLPCMNTDLISSLSKRGIFNVQELLDIPKAALQTITANFPSSRLYQDLQHFPNVKMKLKVQRRDTDGEKSHTLHIRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSFSDHLFTSMKLPPTPENLQGIKLILVSDCYIGFEQEHSVEELVVC 2073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00648 2073 SMART Sec63_2 1756 2069 IPR004179 -
Cca03g00648 2073 SMART Sec63_2 940 1248 IPR004179 -
Cca03g00648 2073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 847 IPR027417 -
Cca03g00648 2073 CDD DEXHc_ASCC3_1 439 635 - -
Cca03g00648 2073 Gene3D - 1253 1479 IPR027417 -
Cca03g00648 2073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1174 1472 IPR027417 -
Cca03g00648 2073 SUPERFAMILY "Winged helix" DNA-binding domain 847 952 IPR036390 -
Cca03g00648 2073 SMART helicmild6 727 819 IPR001650 -
Cca03g00648 2073 SMART helicmild6 1563 1640 IPR001650 -
Cca03g00648 2073 MobiDBLite consensus disorder prediction 308 348 - -
Cca03g00648 2073 CDD DEXHc_ASCC3_2 1287 1475 - -
Cca03g00648 2073 Pfam DEAD/DEAH box helicase 1290 1454 IPR011545 GO:0003676|GO:0005524
Cca03g00648 2073 SUPERFAMILY "Winged helix" DNA-binding domain 1668 1768 IPR036390 -
Cca03g00648 2073 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 470 2068 - -
Cca03g00648 2073 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 426 472 - -
Cca03g00648 2073 MobiDBLite consensus disorder prediction 327 348 - -
Cca03g00648 2073 Pfam Sec63 Brl domain 1758 2067 IPR004179 -
Cca03g00648 2073 Gene3D - 849 939 IPR036388 -
Cca03g00648 2073 Gene3D - 640 842 IPR027417 -
Cca03g00648 2073 Gene3D - 941 1083 - -
Cca03g00648 2073 PIRSF BRR2 17 2072 - -
Cca03g00648 2073 Gene3D - 428 639 IPR027417 -
Cca03g00648 2073 SUPERFAMILY Sec63 N-terminal domain-like 1789 1944 - -
Cca03g00648 2073 PANTHER SEC63 DOMAIN-CONTAINING 470 2068 - -
Cca03g00648 2073 PANTHER SEC63 DOMAIN-CONTAINING 426 472 - -
Cca03g00648 2073 Gene3D C2 domain 1142 1251 IPR035892 -
Cca03g00648 2073 Gene3D - 1086 1139 - -
Cca03g00648 2073 Pfam Helicase conserved C-terminal domain 697 817 IPR001650 -
Cca03g00648 2073 Gene3D C2 domain 1959 2071 IPR035892 -
Cca03g00648 2073 MobiDBLite consensus disorder prediction 308 326 - -
Cca03g00648 2073 CDD SF2_C_Ski2 639 830 - -
Cca03g00648 2073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1499 1697 IPR001650 -
Cca03g00648 2073 CDD SF2_C_Ski2 1479 1652 - -
Cca03g00648 2073 Pfam Sec63 Brl domain 940 1246 IPR004179 -
Cca03g00648 2073 Gene3D - 1764 1900 - -
Cca03g00648 2073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1474 1668 IPR027417 -
Cca03g00648 2073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 864 IPR001650 -
Cca03g00648 2073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1297 1472 IPR014001 -
Cca03g00648 2073 Pfam DEAD/DEAH box helicase 442 615 IPR011545 GO:0003676|GO:0005524
Cca03g00648 2073 Gene3D - 1480 1669 IPR027417 -
Cca03g00648 2073 Gene3D - 1670 1763 IPR036388 -
Cca03g00648 2073 SUPERFAMILY Sec63 N-terminal domain-like 968 1143 - -
Cca03g00648 2073 SMART AAA_5 1302 1473 IPR003593 -
Cca03g00648 2073 SMART AAA_5 454 635 IPR003593 -
Cca03g00648 2073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 624 IPR027417 -
Cca03g00648 2073 SUPERFAMILY E set domains 1977 2067 IPR014756 -
Cca03g00648 2073 SMART ultradead3 436 647 IPR014001 -
Cca03g00648 2073 SMART ultradead3 1284 1484 IPR014001 -
Cca03g00648 2073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 449 631 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00648 Cca-Chr3 11512123 11550137 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00648 K18663 - gmx:100811503 3915.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00648 03 11512123 11550137 Cca03g00648 03 11512123 11550137 ECH