Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00639 ATGAAGCATCGAACTAGAGGTTTGGGGACTAAAATTTCTGAGTTAATAATATGTCCTATATATGCCAACCTACCAACTGAACTACAAGCTAAAATATTTGAACCCACCCCTGAAGGAGCCCGAAAGGTTGTCCTTGCTACTAATATTGCAGAAACCTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCTGGATTTTGTAAAATGAAAAGTTATAATCCAAGAACAGGAATGGAGGCTTTGCAAGTAACTCCCATCTCAAAAGCTTCAGCGATGCAAAGAGCTGGTCGTGCTGGAAGAACTAGTCCAGGAATGTGCTTTAGATTGTATTCTGCATACACTTTTCAAAATGAAATGAATGATAACACTGTGCCAGAAATACAGCGGACTAATCTTGCTGGTGCAGTTTTGTCTTTAAAAAGTCTTGGTATTGGTGACTTATTTAACTTTGATTTCATGGATCCTCCACCTAAAGAGGCCTTATATAAAGCACTGGAACTTCTATATGCATTAAGTGCTTTAAATAAGCATGGTGAGTTAACTAAAGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGGTAGTGGCTTCAGAAAAGTACAAATGTTCAGATGATATCATTTCTATTGCTGCTATGCTTTCTGTTGAAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTGCATGCAGACAATGCAAGGATGAATTTTCACACTGGAAATGTGGGAGACCATATTGCATTGCTAAAGGTCTACGATTCATGGAAGGAGACCAATTTTTCAACACAATGGTGTTATGAAAATTATATACAGGTTAGGAGTATGAAACGGGCTAGGGATATCCGTGATCAACTTGCAGGTCTTTTAGAGAGGGTTGAGATTGAATTAACTTCAAATGCTAATGATTTAGATGCCATCAAGAAAACCATTACATCCGGGTTTTTCCCACACACTGCACGACTGCAAAAGTATGGGTCATATCAGTCTGTTAAACTTTCACAGACTGTTCATATACATCCTAATTCGGGGCTGGTGGAGGTTCTTCCTAGATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGATAGAATTAAAGCCAGAGTGGTTGGTGGAAATTGCCCCCCACTATTACCAGCTTAAGGATGTTGAAGACTCATCTTCGAAGAAATTGCCACGTGGACCAGGACTTGCTCAAGAGGACCGATAG 1248 0.395 MKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMEALQVTPISKASAMQRAGRAGRTSPGMCFRLYSAYTFQNEMNDNTVPEIQRTNLAGAVLSLKSLGIGDLFNFDFMDPPPKEALYKALELLYALSALNKHGELTKVGRRMAEFPLDPMLSKMVVASEKYKCSDDIISIAAMLSVENSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYDSWKETNFSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNANDLDAIKKTITSGFFPHTARLQKYGSYQSVKLSQTVHIHPNSGLVEVLPRWVVYHELVLTTKEYMRQVIELKPEWLVEIAPHYYQLKDVEDSSSKKLPRGPGLAQEDR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00639 415 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH1-LIKE 2 412 - -
Cca03g00639 415 SMART ha2_5 164 256 IPR007502 GO:0004386
Cca03g00639 415 Pfam Helicase associated domain (HA2) 165 239 IPR007502 GO:0004386
Cca03g00639 415 SMART helicmild6 3 103 IPR001650 -
Cca03g00639 415 Gene3D - 149 307 - -
Cca03g00639 415 Coils Coil 282 302 - -
Cca03g00639 415 PANTHER ATP-DEPENDENT RNA HELICASE 2 412 - -
Cca03g00639 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 297 IPR027417 -
Cca03g00639 415 CDD SF2_C_RHA 13 111 - -
Cca03g00639 415 Gene3D - 2 124 IPR027417 -
Cca03g00639 415 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 144 IPR001650 -
Cca03g00639 415 Pfam Helicase conserved C-terminal domain 14 102 IPR001650 -
Cca03g00639 415 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 313 390 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00639 Cca-Chr3 11229796 11242658 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00639 K12813 - gmx:100809559 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00639 03 11229796 11242658 Cca03g00639 03 11229796 11242658 ECH