Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00607 ATGTTGTTGCGAGACAACCACCGAATAGCGATTCATGGTACAATGTTGAAGCTCGTTGTGCGCAAAGGAATCCCCATCATCACCCACCCTTCATCATTCTCCACATCCACCTCTGACGAACACGTCATCATCATCCACAACCTCACCTCCTCCGCCAACGACTTCGCCAAAGCCACCTTCCTCACCAGACTGCATCTCCAAAACTCAACACCCCACACCCTCTTCCACGCTCTCACCCGCGCCAACCTCACGCCCCGCGCCTTCGCCGTCCTCATACTCGCTTTCTGCCAACTGGGTCTCGTCCACCAAGCCCTCTCCCTTTTCAAAAACCATTCTTTTCTTCCTCCGTTGCAGCCCTGCAACGCGCTTCTCCATGGCCTCGTCAAGACCCACATGTTCGATTCCCTGTGGGAGGTCTACGGAGACATGGTGTCGCGCGGCTTTTCCCCCACCGTTGTCACCTACGGCATTTTGATGAATGGTTACTGCGTACAGGGTGATTTTAGCAACGCGCGCAGGGTGTTCGATGAAATGCTCCAGAGAGGGATTGAACCGACGGTGGTGGTTTACACTATTCTCATTCGCGCGTTTTGCAACGAGGGTCGGATGGGAGAGGCAGAGGGCGTGTTTGGACGAATGAGGGAATCTGGGGTGGTGGCTCCCAATTTGTACACTTATAAGACCCTCATGGATGGGTATTGCAGGATGGGTGATGTGAAACGGGTTTTTGACTTGTATTGTGATATGCTGAAGAGGGAGTTGCACCCTGATGTTGTCATTTTTGCTACTCTGGTGGATGTTCTATGCAAGGTAGGGAACTTGGCTGGAGCAATGCGCTTGTGGGTGGAAATGGAAAAGTGTGGAATCTTCCCTGATGTTTTTACGTACAATATAGTCATCAAGGGTCTGTGTGACTCTGGTAGATTGGAAGAGGCTGAGGGTTTGATGGAGAAAATGGACAAAGTTGGGGTTCTTGCCGATTCTGTGACATACAATGTGGTGATTGATGGGTGCTGTAAAACAGGTGACATGGAGAAGGCTATTGAGGTGTGTTCCCAAATGACTGAAAGGAAAATTGAACCAAATGTTATTACATTTTCGACGCTGATTGATGGGTTTTGCAAGAAAGGAAATGTAAAAGCTGCGATGGGCTTGTACACGGAAATGGTCATCAAGGGTCTTGCGCCTTGCGTGGTAACTTACACGGCGTTGATTGATGGACACTGCAAGGTTGGAAACATCAAAGAGGCTTTCAGGTTGCAAAAGGAGATGCTGGAAGCTGGACTAACTCCCAATGTGTTCACAGTTAGTTGTGTAATTGATGGCCTTTTGAAAGATGGAAGGATACATGATGCAATCAAACTGTTCTTGGAGAAAACTGGAGGTAAAATGGATGATGGTAGGTTTTGTGCTCCAAACAGTGTGATGTATGCCATTTTAATTCAAGGATTATGTAAAGATGGACGGATCTTTAAGGCCACCAAGTTTTTTGCGGAAATGAGATGGAATGGATTCAAACCAGACATGCTAGTTTATTTAACCATGTTGCAGGCGCACTTTCAATTCAAGCATATGATTGATGTAATGATGCTGCATGCAGACATGCTGAAGATGGGTGTAGTGCGAAATACTAACATATATCGTGTAATGTCTAGGGGCTATAGAGAGAATGGATACTTGAAATCAGCTCATATGTGTTCTGAGCATTTAATGGAATGTGGCATTCGGTTTCCTGATTCAGGAGGGTGA 1749 0.4711 MLLRDNHRIAIHGTMLKLVVRKGIPIITHPSSFSTSTSDEHVIIIHNLTSSANDFAKATFLTRLHLQNSTPHTLFHALTRANLTPRAFAVLILAFCQLGLVHQALSLFKNHSFLPPLQPCNALLHGLVKTHMFDSLWEVYGDMVSRGFSPTVVTYGILMNGYCVQGDFSNARRVFDEMLQRGIEPTVVVYTILIRAFCNEGRMGEAEGVFGRMRESGVVAPNLYTYKTLMDGYCRMGDVKRVFDLYCDMLKRELHPDVVIFATLVDVLCKVGNLAGAMRLWVEMEKCGIFPDVFTYNIVIKGLCDSGRLEEAEGLMEKMDKVGVLADSVTYNVVIDGCCKTGDMEKAIEVCSQMTERKIEPNVITFSTLIDGFCKKGNVKAAMGLYTEMVIKGLAPCVVTYTALIDGHCKVGNIKEAFRLQKEMLEAGLTPNVFTVSCVIDGLLKDGRIHDAIKLFLEKTGGKMDDGRFCAPNSVMYAILIQGLCKDGRIFKATKFFAEMRWNGFKPDMLVYLTMLQAHFQFKHMIDVMMLHADMLKMGVVRNTNIYRVMSRGYRENGYLKSAHMCSEHLMECGIRFPDSGG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00607 582 Pfam PPR repeat family 256 305 IPR002885 -
Cca03g00607 582 Pfam PPR repeat family 327 375 IPR002885 -
Cca03g00607 582 Pfam PPR repeat family 396 445 IPR002885 -
Cca03g00607 582 Pfam PPR repeat family 150 199 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 47 179 IPR011990 GO:0005515
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 462 580 IPR011990 GO:0005515
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 321 388 IPR011990 GO:0005515
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 180 249 IPR011990 GO:0005515
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 250 320 IPR011990 GO:0005515
Cca03g00607 582 Gene3D Tetratricopeptide repeat domain 389 460 IPR011990 GO:0005515
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca03g00607 582 PANTHER ATPASE EXPRESSION PROTEIN 3 269 559 - -
Cca03g00607 582 PANTHER ATPASE EXPRESSION PROTEIN 3 38 275 - -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Cca03g00607 582 TIGRFAM PPR: pentatricopeptide repeat domain 120 152 IPR002885 -
Cca03g00607 582 Pfam PPR repeat 220 249 IPR002885 -
Cca03g00607 582 Pfam PPR repeat 470 501 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Cca03g00607 582 Pfam PPR repeat 120 148 IPR002885 -
Cca03g00607 582 Pfam PPR repeat 90 109 IPR002885 -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Cca03g00607 582 PANTHER OSJNBA0060P14.6 PROTEIN 269 559 - -
Cca03g00607 582 PANTHER OSJNBA0060P14.6 PROTEIN 38 275 - -
Cca03g00607 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00607 128 576 Glycosyltransferase AT1G05670 27.692 4.25e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00607 - - lja:Lj1g3v0525420.1 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00607 03 10546492 10548345 Cca03g00607 03 10546492 10548345 ECH