Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00606 ATGACACACTTGAAATGGTTCAACACTTTGCTTGGAAGCTGTGCGAACAAGATGGTTCGTAGCCCCATGTCCACGTGGCATCATAATATTAGTCTCAAACCACCAAAGCCAAACGAGAGCCTTAGGAAGCACCTTGAATGCAACAGGCACACCAAGGTGCTCCTCCTCTTCAGATCCTTCCTAAGAAAAAGACCAACTTTCAACTCCATTGATAGCTTTTCTCTGCTATATGCCCTCAAAGCTTCTCCCACCCAAGGAAAACAACTGCACACCCTCATCATAAAACTTGGGTACCAAGCCACACTTCAACTCCAGACATCACTTCTCAAAGGGTATGCTGAATGTGGCAACCTTCTTGATGCACGCCAAGTGTTCGATGAAATACCCTCCAAGAACGTCATATGCTGGACCACCTTGATTTCTGCCTATGTTGGCAACCACAAGCCTGGGAAAGCCTTGCAACTGTTCAGGCTGATGCAGATGAGCAACGTGGAGCCTGATCAAGTCACTGTGACCGTTGCTCTCTCTGCCTGTGCTGAGACTGGGGCGCTGGAAATCGGCGAACGGATCCATGCTTTCGTGCGAAGCAAGCAAGAGATGGATAAGGATTTGTGTTTGGAGAATGCTCTTATTAACATGTATGCTAAGTGTGGGGATGTTGTGACAGCCAGGAAGGTGTTTGATGGCATGAGGAACAAGGATGTCACAACTTGGACTTCCATGATTGTGGGGCATGCAGTACACGGGCAAGCGCGCGAGGCTCTACGACTTTTCTCAGGAATGAGCACAAGGATGGAGGGGGATGATTGGAATTCGCGAAGCTGTGTCATGAAACCGAATGATGTAACGTTCGTAGGGGTTTTAATGGCTTGCAGCCATGCAGGGTTGGTTGAGGAAGGGAAGTGGCATTTCAGAAGTATGAGTGAAGTTTATGGTATAGAGCCAAGAGAGGCTCATTTTGGCTGCATGGTGGATCTTTTATGCAGAGGTGGGCATCTCAGAGAGGCCTATGACTTCATTATGGAGATGCCAGTGCCGCCAAATGCGGTTTTGTGGCGAACCTTGCTAGGGGCTTGCAGTGTTCATGGTGAACTAGAGCTGGCTGCAGAAGTGAGGCTCAAGCTACTGAAGTTGGACCCTGGCTATGTGGGTGACAGTGTTTCTATGTCTAATATTTATGCAAATAAAGGCATGTGGAATAAGAAGATAGGTGTTAGGAATCAGATAAAACAGTCAAGAGCTCCTGGTTGCAGCTCCATTGAGGTGGGAAGTGGGGTTAGTGAATTTGTTACCTCAGATGATGATCATCTTTTAGTGACAGATAAGCGATGTTCTTGA 1338 0.4746 MTHLKWFNTLLGSCANKMVRSPMSTWHHNISLKPPKPNESLRKHLECNRHTKVLLLFRSFLRKRPTFNSIDSFSLLYALKASPTQGKQLHTLIIKLGYQATLQLQTSLLKGYAECGNLLDARQVFDEIPSKNVICWTTLISAYVGNHKPGKALQLFRLMQMSNVEPDQVTVTVALSACAETGALEIGERIHAFVRSKQEMDKDLCLENALINMYAKCGDVVTARKVFDGMRNKDVTTWTSMIVGHAVHGQAREALRLFSGMSTRMEGDDWNSRSCVMKPNDVTFVGVLMACSHAGLVEEGKWHFRSMSEVYGIEPREAHFGCMVDLLCRGGHLREAYDFIMEMPVPPNAVLWRTLLGACSVHGELELAAEVRLKLLKLDPGYVGDSVSMSNIYANKGMWNKKIGVRNQIKQSRAPGCSSIEVGSGVSEFVTSDDDHLLVTDKRCS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00606 445 Pfam E motif 362 421 IPR046848 -
Cca03g00606 445 PANTHER - 102 437 - -
Cca03g00606 445 PANTHER - 32 134 - -
Cca03g00606 445 Pfam PPR repeat 237 262 IPR002885 -
Cca03g00606 445 Pfam PPR repeat 320 343 IPR002885 -
Cca03g00606 445 Pfam PPR repeat 282 309 IPR002885 -
Cca03g00606 445 Pfam PPR repeat 208 234 IPR002885 -
Cca03g00606 445 Gene3D Tetratricopeptide repeat domain 267 421 IPR011990 GO:0005515
Cca03g00606 445 Gene3D Tetratricopeptide repeat domain 38 198 IPR011990 GO:0005515
Cca03g00606 445 Gene3D Tetratricopeptide repeat domain 199 266 IPR011990 GO:0005515
Cca03g00606 445 PANTHER - 32 134 - -
Cca03g00606 445 PANTHER - 102 437 - -
Cca03g00606 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Cca03g00606 445 TIGRFAM PPR: pentatricopeptide repeat domain 208 235 IPR002885 -
Cca03g00606 445 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
Cca03g00606 445 Pfam PPR repeat family 131 179 IPR002885 -
Cca03g00606 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00606 Cca-Chr3 10543408 10544823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00606 47 436 Glycoside Hydrolase AT3G49170 35.338 4.34e-72 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00606 - - gmx:102668293 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00606 03 10543408 10544823 Cca03g00606 03 10543408 10544823 ECH