Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00588 ATGAAGTTGCATCTAGCACAAGTTGTTATAATAGGCATTATTTTTGGAATTGGGCTTGAAGGGTGCCAATGCGAGGTTGTGCAGTTCATTTTTGGAGACTCACTCTCTGATGTTGGAAACAACAAGTACCTCTCTAAAAGTCTTGCACAGGCAAGTTTACCATGGTATGGTATTGATTTGGGTAATGGACTACCTAATGGAAGGTTCTCTAATGGTCGCACGGTTTCAGATATAATAGGTGACAAACTGGGCCTTCCAAGGCCTCCAGCATTCTTGGACCCATCTTTAAGTGAAGATGTTATATTGGAAAATGGGGTGAATTATGCTTCAGGGGGTGGCGGCATATTGAATGAAACCGGCACTTATTTTATTCAAAGGTTTTCTCTCTACAAGCAAATTGAGCTGTTTCAGGGGACACAAGAACTGATTAGAAGCAAAATTGGAAAAGAGGAGGCAGAAAAGTTTTTCCAAGGAGCTCGTTATGTTGTTGCTTTAGGCAGCAATGACTTCATCAACAACTATTTGATGCCTGTTTATAGTGACTCATGGACTTATAATGATCAAACCTTCATGGACTACTTGATAGGAACTCTACGAGAGCAATTGAAGCTACTGCATGGCCTAGGAGCAAGGCAGTTGATGGTGTTTGGGCTTGGCCCAATGGGCTGTATTCCTCTTCAAAGGGTGCTTAGTACATCTGGGGATTGTCAAGATAGAACAAACAAGTTGGCTGTTACCTTTAACAAAGCAGCAAGCAAGTTAATAGATGACTTGGGAAAGCAACTTCCCAATTCAACCTACAGATTTGGAGATGCATATGATGTTGTTAATGATGTAATTAGCAACCCAAAAAAATATGGATTTCAAAACTCAGACTCACCCTGTTGCTCCTTCGGGAATATTCGACCTGCTCTTACATGTATACCTGCATCAAGGTTGTGCAAAGATAGAAGCAAGTATGTTTTTTGGGATGAGTATCATCCATCAGACAGAGCCAATGAACTAATTGCCAATGAACTCATCAAGAAATTTGGATTTTTGCGTGTTGATCAAACAAAACCTCCTTCACCATCACCTGCTCTTGCTCCTTCTCCACAAGATTAA 1104 0.4085 MKLHLAQVVIIGIIFGIGLEGCQCEVVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDLGNGLPNGRFSNGRTVSDIIGDKLGLPRPPAFLDPSLSEDVILENGVNYASGGGGILNETGTYFIQRFSLYKQIELFQGTQELIRSKIGKEEAEKFFQGARYVVALGSNDFINNYLMPVYSDSWTYNDQTFMDYLIGTLREQLKLLHGLGARQLMVFGLGPMGCIPLQRVLSTSGDCQDRTNKLAVTFNKAASKLIDDLGKQLPNSTYRFGDAYDVVNDVISNPKKYGFQNSDSPCCSFGNIRPALTCIPASRLCKDRSKYVFWDEYHPSDRANELIANELIKKFGFLRVDQTKPPSPSPALAPSPQD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00588 367 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Cca03g00588 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 1 357 - -
Cca03g00588 367 SUPERFAMILY SGNH hydrolase 159 343 - -
Cca03g00588 367 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Cca03g00588 367 Gene3D SGNH hydrolase 28 344 IPR036514 -
Cca03g00588 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00588 Cca-Chr3 10178736 10182881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00588 29 340 Acyl Lipid Metabolism Gene Families AT4G10950 32.166 2.97e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00588 - - gmx:100803991 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00588 03 10178736 10182881 Cca03g00588 03 10178736 10182881 ECH