Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00582 ATGAAACACATCAACCCACCCAACCATCTGAGCCCACCCAGCTATCTCAACTCACCCAACCATCTGAGCCCACCTAGTCATGTCAACCCACACAACCATCTGAGCCCACCCAACTATCTCAACCCACCCAACCATCTGAGCCCACCTAGTCATGTCAACCCACACAACCATCTAAGCCCACCCAACCCTTTGAACCTATCAGGGAGAAGATCACTGTGGCATCGCTTTTCTTACTTCACCGCTTCGCCACTACACTTTTCTCACCAACAACCATTTTCAGAATCTACAATGGGGGAGCACGTGGTTTTATCTGTTGTTGACCCTCTTCTCATAGCACCTGCAAATGCTCAAGGAACACTCATTGAGGGTGCTACTCATGGTAATGATGTTGGGGAATGTGATACACTGAaagaagatgaagaagaagaagaCCTTATCCAAATGGTGGAGTGTCGCATTTGCCAGGAGGAGGATACCCTTCAAAATTTGGACACACCCTGTGCTTGCAGTGGATCTTTAAAGTTTGCTCATACGAAGTGTGTTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAGATCTGCCATCAGCCATTCAAACCTGGTTATACTGCAACATCACCTGTCTATCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGCAACCTCTAGTAATCCTTTAAATTTGCACGATTCTCGACTTTTGGCTTTTGCAGCTGTGGAGCACCAAGTTTGGGAGACTGAGCATGAAGATTATGTTTATACTAGCACCAGTGGAACTACATTGTGGCACTCTGTTGGTCTAATTTTAATGGCTCTTTTACTTCTAAGGCATGCTGCTCCCCTCTTCAATGCTGATATGGAGAAAGTTTTAACATATATTTATTTTTTCTTTTTTCATGCGGCTGCTGTTATCCTTCCTTGCTACCTTATGGCCCGGATAATTCGCATAATACAGGATCAAAGTCAAAGATAA 987 0.4357 MKHINPPNHLSPPSYLNSPNHLSPPSHVNPHNHLSPPNYLNPPNHLSPPSHVNPHNHLSPPNPLNLSGRRSLWHRFSYFTASPLHFSHQQPFSESTMGEHVVLSVVDPLLIAPANAQGTLIEGATHGNDVGECDTLKEDEEEEDLIQMVECRICQEEDTLQNLDTPCACSGSLKFAHTKCVQLWCYEKGDTICEICHQPFKPGYTATSPVYHPGDTSIDISDDWATSSNPLNLHDSRLLAFAAVEHQVWETEHEDYVYTSTSGTTLWHSVGLILMALLLLRHAAPLFNADMEKVLTYIYFFFFHAAAVILPCYLMARIIRIIQDQSQR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00582 328 ProSiteProfiles Zinc finger RING-CH-type profile. 143 203 IPR011016 GO:0008270
Cca03g00582 328 MobiDBLite consensus disorder prediction 1 63 - -
Cca03g00582 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Cca03g00582 328 SMART ringv_2 150 197 IPR011016 GO:0008270
Cca03g00582 328 PANTHER OS11G0600700 PROTEIN 132 328 - -
Cca03g00582 328 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 132 328 IPR033275 -
Cca03g00582 328 SUPERFAMILY RING/U-box 149 201 - -
Cca03g00582 328 Pfam RING-variant domain 151 196 IPR011016 GO:0008270
Cca03g00582 328 MobiDBLite consensus disorder prediction 10 40 - -
Cca03g00582 328 CDD RING_CH-C4HC3_MARCH 151 197 - -
Cca03g00582 328 Pfam Protein of unknown function (DUF3675) 202 319 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00582 Cca-Chr3 10030719 10036783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00582 - - gsj:114409718 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00582 03 10030719 10036783 Cca03g00582 03 10030719 10036783 ECH