Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00580 ATGTCAGAGAAGACCATGGTCCACTCAAGGTTTATATTTTGTGTGATGCTCATTTCTATGTTCCTTTTGGTCCTGTCTTCAATTTTCCTACTCCAGTTTAGCAGTCATTCTTTGATACCTAGATCAGTGTTAGAACTTATTCTTGTCAATAATACATCACTTAACTTCATGCCCAATTTGAAGAGAGAACAAGTCATGACCCCTCCCTATCCTCCTGGGGACTCAAATTTTCAAGCACAAAAATCCAGAGAATCGGATTGTCAAGCTTCTGATTCAATCCGGAAAACAACTTCTGCAGGACAGCAGATGAATATGGCGTCCCACCCAACACAGCCTTTGTTGAGAGTATTCATGTATGACTTGCCTCCAGAGTTTCACTTTGGGTTATTGGGTTGGAAGGGAAGTGTGAATCAAACATGGCCTGATGTGGATAACTCCAAACACATCCCAAGCTATCCAGGAGGTCTTAACTTGCAGCACAGCATGGAATACTGGCTCACCCTTGATCTTCTGTCATCATCAAACATGGCAAAAGTTGGCCAGCCTTGCACTGCAATTAGAGTGAAGGATTCAAGTCAAGCAGATTTCTTAATGGGAAGGAAAGAATGGAAACGTTATGGAGGGAAGGATCATCTAATTGTAGCCCACCATCCTAACAGCTTGCTGGATGCAAGAAGAAAGTTAGGTTCTGCTATGCTCGTGCTTGCGGATTTCGGAAGGCACCTATTAAGCACCATACCAAGAGCTGAATCAGCTTCATTTGAAGAACGTACCACACTGATGTATTTCCAGGGAGCAATATATAGGAAAGATGGAGGAGCCATCCGTCAAGAACTGTACTACCTCCTCAAAGATGAGAAAGATGTGCATTTCACATTTGGGAGCATAGGAGGAAATGGGATCCATCAGGCAAGCCAGGGCATGGCCTTGTCAAAATTCTGCCTCAACATTGCTGGTGATACCCCATCGTCGAATCGCCTCTTTGACGCCATAGTAAGCCACTGTGTTCCTGTGATCATTAGTGATGAAATTGAGCTACCCTTTGAGGATGTCTTGGACTACTCAGGCTTCTCCTTATTTGTCAGTGCCTCTGATGCCGTGAAGACAGGCTACCTGTTGAATCTCCTTCGTTCGATCAAGCGGAACGAGTGGAACAAGATGTGGGAAAGATTGAAGGAGATCACACACCACTTTGAGTATCAGTATCCATCCCAACCTGGGGATGCAGTGAATATGATTTGGCAGCAAGTTGCACATAAGATATCTTCAGTAAGGTTCAATTTGCACAGGAAGAACAGATACCAGAGATCTCAGCTTCGTGTTAAGACTAACTGA 1335 0.4404 MSEKTMVHSRFIFCVMLISMFLLVLSSIFLLQFSSHSLIPRSVLELILVNNTSLNFMPNLKREQVMTPPYPPGDSNFQAQKSRESDCQASDSIRKTTSAGQQMNMASHPTQPLLRVFMYDLPPEFHFGLLGWKGSVNQTWPDVDNSKHIPSYPGGLNLQHSMEYWLTLDLLSSSNMAKVGQPCTAIRVKDSSQADFLMGRKEWKRYGGKDHLIVAHHPNSLLDARRKLGSAMLVLADFGRHLLSTIPRAESASFEERTTLMYFQGAIYRKDGGAIRQELYYLLKDEKDVHFTFGSIGGNGIHQASQGMALSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDEIELPFEDVLDYSGFSLFVSASDAVKTGYLLNLLRSIKRNEWNKMWERLKEITHHFEYQYPSQPGDAVNMIWQQVAHKISSVRFNLHRKNRYQRSQLRVKTN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00580 444 MobiDBLite consensus disorder prediction 71 89 - -
Cca03g00580 444 Pfam Exostosin family 190 374 IPR040911 -
Cca03g00580 444 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 195 433 IPR004263 GO:0006486|GO:0016757
Cca03g00580 444 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 2 196 IPR004263 GO:0006486|GO:0016757
Cca03g00580 444 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 195 433 - -
Cca03g00580 444 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 2 196 - -
Cca03g00580 444 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00580 Cca-Chr3 10020274 10022536 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00580 - - gmx:100795371 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00580 03 10020274 10022536 Cca03g00580 03 10020274 10022536 ECH