Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00575 ATGGTTACGAAAGGGAACCCTGGGGACCATAGGAATAATAGGAATTCAGTGCCTATTTTCATCATAGTTGGCTTGTGTGGTTTCTTCTATGTATTGGGTTTGTGGCAACGGAGTGGTTTTGGAAAGGGAGACAGTATAGCTGTTGAGATTACTAAACAGACAGATTGCAGTATTCTCTCTGATCTAAACTACGAGACCCACAATGGGGATGATGCTGATGCTCCTAATGCACAAGTGAAGGAGTTCCAGCCGTGTGACGATCGCTACATTGATTACACGCCTTGTCATGATCAAGCACGAGCAATGACATTTCCCCGGGACAATATGGCTTATAGAGAAAGGCATTGTCCTCCTGATGAAGAAAAACTGTATTGTCTCATACCTGCCCCTAGAGGATATGCAACACCGTTTCCATGGCCCAAGAGTCGCGATTATGTACCATATGCAAATGCACCTTACAAGAGCCTGACAGTTGAGAAGGCTGTGCAGAATTGGATACAGTATGAAGGAAATGTTTTCAGGTTCCCTGGTGGTGGAACACAGTTTCCCAAGGGAGCTGATGCTTACATTGATGAACTTGCTTCTGTTATTCCAGTGGATAATGGGATGATTAGAACTGCATTGGATACTGGCTGTGGGGTTGCTAGTTTTGGTGCATACTTGTTCAAGAAAAATGTTGTTACCATGTCAATTGCACCACGGGACTCTCATGAAGCGCAAGTTCAATTTGCTTTGGAAAGAGGTGTTCCAGCAATCATTGGTGTTCTTGGAACAATAATGCTTCCCTTCCCTTCTGGAGCTTTCGACATGGCACATTGTTCTCGCTGCTTGATTCCATGGGGTGGAAATGATGGAAAGTACATGAAGGAAGTTGACCGGGTTCTTAGACCTGGTGGTTACTGGGTACTCGCTGGTCCTCCTATCAACTGGAAGAATAACTACCGAGCATGGCAACGTCCTGAATATGAGCTGGAGGAGGAGCAACGGCAGATTGAGGATACTGCTAAACTTCTTTGCTGGGAAAAGAAATATGAAAAGGGTGAAATTGCTATCTGGAAAAAAGCATTACATAGTGATGATTGCGGTGAACAAGATGCTAAACCTACAATGTGTGATACCACAAATTCTGATGATGTCTGGTACAAGAAAATGGAAGATTGTGTAACTCCTAGTAAACCTGGTGGCTCATGGAAACCATTCCAAGAGAGACTCAATGCTGTTCCTTTCAGAATCACCAGTGGATCTGTTCCTGGTGTATCTGTGGAAGTATTTGAAGAGGACAACCGAGTATGGAAGAAGCATGTGAATGCTTACAAACGTATCAACAAAATCCTTAGCTCAGGGAGGTATCGCAACATAATGGACATGAATGCTGGCCTGGGAAGTTTTGCTGCTGCACTGGAATCTCCCAAATTATGGGTTATGAATGTTGTGCCTACAATTGCTGAGAAAGCTAACTTGGGTGTTATATTTGAGCGTGGATTGGTTGGCATTTATCACGACTGGTGTGAAGCCTTCTCCACATATCCAAGGACATATGACCTTATCCATGCAAATGGCCTTTTCAGCTTGTACAAGAGTGGATGTAATGCAGAAGACATTCTATTGGAGATGGACCGAATCTTGCGTCCCGAAGGAGCAGTAATATTCCGAGATCAAGGTGATGTGCTGATGCAGGTGAGAAGAATTGTGAAAGGAATGAGATGGAGTACCAAAATGATGGATCATGAGGATGGTCCAATGGTTTCAGAGAAAGTGTTGTTTGCTGTCAAGCAGTATTGGGTAGCCAGCGACAACACCACGAGCTCAGAGTGA 1815 0.4413 MVTKGNPGDHRNNRNSVPIFIIVGLCGFFYVLGLWQRSGFGKGDSIAVEITKQTDCSILSDLNYETHNGDDADAPNAQVKEFQPCDDRYIDYTPCHDQARAMTFPRDNMAYRERHCPPDEEKLYCLIPAPRGYATPFPWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPKGADAYIDELASVIPVDNGMIRTALDTGCGVASFGAYLFKKNVVTMSIAPRDSHEAQVQFALERGVPAIIGVLGTIMLPFPSGAFDMAHCSRCLIPWGGNDGKYMKEVDRVLRPGGYWVLAGPPINWKNNYRAWQRPEYELEEEQRQIEDTAKLLCWEKKYEKGEIAIWKKALHSDDCGEQDAKPTMCDTTNSDDVWYKKMEDCVTPSKPGGSWKPFQERLNAVPFRITSGSVPGVSVEVFEEDNRVWKKHVNAYKRINKILSSGRYRNIMDMNAGLGSFAAALESPKLWVMNVVPTIAEKANLGVIFERGLVGIYHDWCEAFSTYPRTYDLIHANGLFSLYKSGCNAEDILLEMDRILRPEGAVIFRDQGDVLMQVRRIVKGMRWSTKMMDHEDGPMVSEKVLFAVKQYWVASDNTTSSE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00575 604 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 11 599 IPR004159 GO:0008168
Cca03g00575 604 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 91 591 IPR004159 GO:0008168
Cca03g00575 604 Gene3D Vaccinia Virus protein VP39 159 357 IPR029063 -
Cca03g00575 604 PANTHER METHYLTRANSFERASE PMT2-RELATED 11 599 - -
Cca03g00575 604 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 437 554 IPR029063 -
Cca03g00575 604 CDD AdoMet_MTases 206 300 - -
Cca03g00575 604 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 324 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00575 Cca-Chr3 9824895 9843945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00575 - - gmx:100807547 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00575 03 9824895 9843945 Cca03g00575 03 9824895 9843945 ECH