Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00545 ATGGCCATCGAGACAGGTAGAAATACAAGACGGGTTGGAACAAGAACAAGCCCATCATCACCAGAACCACTGGTCGAAGAGATCGTACCTAATTCTGCATGGACTGAGGACCATGCACACCATTTTCTTCTTGTAGATCTTCCTGAATTCACAAAGGAGGAGGTGGAGCTTCAAGTTGATAGCTCCACTGGTCGTATATTTGTAAAAGGCGAAAGGCAAACAGATGAACATAAATGTTTTCGCTTTGAACTTGCCTTTCCACTGCCAGCGGATTCAGATATGGATAACATATCCGGAAACTTCGATAGTGAAACTGAAATCCTTCACGTGTACGTCCCCAAGCGAAGTTCACAAGAGCACAGAGAAACTGATGATGAGATACAGAATGTTTCGAATGGCAATGTTGAAAGGCCTCAAGAAATTGAAAGTGATCATGAGTACCACAATGCGGTTAATGAGGAGAGGGATCATTCTCCACACGACTGGGGTAGAGAGAAGGAAGAAATAAAAAATGAAAATGCACATAACATAGAGGGTTTTTCTGATGGATTAACAAGAAGGAAGTTGGTGCAAAAACATAACGTGTCAAGAGCTCTAGTGGAGGTTTTGATGAGAAACAAGGGAGTTGTTGGAACTGCTATTATGGCTTTTTCCTTTGGATTGTATGTGTCTCATAAGTTTCATTCATGGAGTGCACCATAA 702 0.4188 MAIETGRNTRRVGTRTSPSSPEPLVEEIVPNSAWTEDHAHHFLLVDLPEFTKEEVELQVDSSTGRIFVKGERQTDEHKCFRFELAFPLPADSDMDNISGNFDSETEILHVYVPKRSSQEHRETDDEIQNVSNGNVERPQEIESDHEYHNAVNEERDHSPHDWGREKEEIKNENAHNIEGFSDGLTRRKLVQKHNVSRALVEVLMRNKGVVGTAIMAFSFGLYVSHKFHSWSAP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00545 233 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g00545 233 Pfam Hsp20/alpha crystallin family 34 121 IPR002068 -
Cca03g00545 233 MobiDBLite consensus disorder prediction 115 134 - -
Cca03g00545 233 PANTHER INACTIVE PROTEIN RESTRICTED TEV MOVEMENT 2-LIKE 13 231 - -
Cca03g00545 233 SUPERFAMILY HSP20-like chaperones 27 122 IPR008978 -
Cca03g00545 233 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 23 130 IPR002068 -
Cca03g00545 233 CDD ACD_sHsps_p23-like 34 114 - -
Cca03g00545 233 MobiDBLite consensus disorder prediction 152 176 - -
Cca03g00545 233 PANTHER HEAT SHOCK PROTEIN 26 13 231 IPR045045 -
Cca03g00545 233 Gene3D - 27 157 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00545 Cca-Chr3 9225940 9227247 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00545 - - gmx:100802285 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00545 03 9225940 9227247 Cca03g00545 03 9225940 9227247 ECH