Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00542 ATGGCTGAATCTGCTAACTCGATCCACAACAGTGGGCAGAAGTTGGCCGGAAAAGTTGCCATAATCACCGGCGGAGCGAGCGGCATCGGAGAAGAGACGGCGCGTGTGTTTGCGGACCATGGTGCGCGAATGGTGGTCATCGCAGACATCCAAGATGACCTGGGCAACCAAGTTGCAGCATCCATCGGCTCTCACAGGTGCAGCTATGTCCATTGTGACGTTACAGACGAAGAGCAAGTGAAAAACCTCGTGGATGCGACGGTCAACGCCTACGGGCAGTTGGACGTGATGTTCAGCAACGCCGGTATCCTCAGTCCCTCCGACCAGACAATCCTCGACCTCGACCTGTCGCAGTTCGACCGCCTCTTCGCCGTCAACGCGCGGGGCATGGCGGCCTGCGTCAAGCACGCGGCGCGCTCCATGGCGGCGCTGGGCGTGAGGGGGAGCATCGTGTGCACGGGGAGCGTGTCGGCGTCGCGAGGCGCGCCGCAGCGCACGGACTACGTGATGTCGAAGCACGCCGTGAAGGGGCTGGTGCGGTGCGCGAGCGCGCAGCTTGGGGCGCACGGTATTAGGGTGAACTGCGTCTCACCGAGTGGGTTGGCCACGCCCCTCACACGTGCCGCGCTTGCCTCCATGGAGACCCCGGAGGAGGTGCAACAACACTATGCGCAGAGCTCCAGGCTGAAAGGTGTCGTTTTGACCCCTAAATTTGTGGCCGATGCGGTGCTGTTCCTTGCGTCCAGTGACTCTCAGTTTGTGACCGGACACGATCTTGTCGTCGACGGTTGTTTCGCCCGTGCCTGA 807 0.6171 MAESANSIHNSGQKLAGKVAIITGGASGIGEETARVFADHGARMVVIADIQDDLGNQVAASIGSHRCSYVHCDVTDEEQVKNLVDATVNAYGQLDVMFSNAGILSPSDQTILDLDLSQFDRLFAVNARGMAACVKHAARSMAALGVRGSIVCTGSVSASRGAPQRTDYVMSKHAVKGLVRCASAQLGAHGIRVNCVSPSGLATPLTRAALASMETPEEVQQHYAQSSRLKGVVLTPKFVADAVLFLASSDSQFVTGHDLVVDGCFARA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00542 268 Pfam Enoyl-(Acyl carrier protein) reductase 24 263 - -
Cca03g00542 268 Gene3D - 4 266 - -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Cca03g00542 268 PRINTS Glucose/ribitol dehydrogenase family signature 229 249 IPR002347 -
Cca03g00542 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Cca03g00542 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Cca03g00542 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Cca03g00542 268 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 267 - -
Cca03g00542 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Cca03g00542 268 PANTHER OXIDOREDUCTASE-RELATED 1 267 - -
Cca03g00542 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 263 IPR036291 -
Cca03g00542 268 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 18 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00542 Cca-Chr3 9154644 9163609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00542 14 262 Acyl Lipid Metabolism Gene Families AT3G55290 26.437 6.47e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00542 - - gmx:100817513 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00542 03 9154644 9163609 Cca03g00542 03 9154644 9163609 ECH