Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00536 ATGCAGAATATGTTACGAGCCAAGCAGATCAGTAGTACCCTTTCAAGCAACGCTAGGAGCTTTTTCCTTAGTGGTTCAAGGTGTAATGCAGGAGATGGCAATTCATGCACTTGTCCCGAGGATGAAACGTGTGTGTCAAGGGGACAGCAAAGGAAAAATGAAGATTTGCTTGTTCAGAAGTCGCCCTCCTTAGTGTCCAAAACCTCGTCTCAGGTTGTGGGAACACTGGTTTCAGGAACCCTGGCAAATGGGCCGGCTTCTCACACGGCGGCGGCTGGGAGTGTTGATCAGTCTGGTTGTGTACAGAAAATTCAGTCTACTTCATATGCACCGAGTAAATCGGACTCTGTAACATATGCTTGTGTTGTTGATGGTGTTCAGGATCATGTTGCACACTCGTCTTCACTTAATGCTGACCAGTTTTATCGGGCCGGTATTGCAGCTGTCAATTTTCTTTCTGATATAGTTAATTATAAGTTTCCTTTATCAGATGGCATGGGAATACTAAACTACTCTAAAAATTATATGGTTGATCCTGCCAGAACTCTACCCAACATTAGATCTTCCAATGTGCAGCAAATTAGGAAGGAGAACTTTACTGCTGTTCATCCCAAACCGCCTGTTTCTGCTCAGCAAGGGCCATCAAACCATCCAAATAATCATGGTGGTGCAAAGGGAAAAGGTGATAGATCAAATTTAGCTAAAGGCTTCAAGCATGTTGCTTCTTCGGGGAGAGAGAAATCAGGGGCAGCTCCAAATATTCCTTTAAATAATTATGATCGCAAAGCCTTGCCACAGAGAACAAGAACTCATGGAAGCCGCTTTGTGACAAATTTTGGTTCCAATGTGCAAACTTCAAATCCTCAGATGTTGGGGTCATTCAAGGAAAGTTTCAATAAACACCCAAGGGATGTGAGTATGCCAGCAAGAATTGGTCCAACGAACAGGCATTTTTCTAATTCAGGGCATGTTGTGGAAGTTGTCAAAGATATACTACAACGGTTAAAATGGGGTCCTGCTACAGAGGAGGCTCTCTATAACCTGAATTTTTCAATTGATGCTTATCAAGCTAACCAGATTCTAAAGCAACTTCAAGACCATTCAGTCGCAGTAAGCTTCTTTTACTGGCTAAAGCGTCAACCGGGCTTCTGGCATGATGGGCATACTTACACCACCATGGTTGGTATCCTGGGCCGTGCCAGAGAGTTTGGTGCTATAAACAAATTGCTGGAGCAGATGGTCAAGGATGGATGCCGCCCTAATGTTGTTACATACAATCGTCTAATTCACAGCTATGGCCGTGCAAACTACCTAAAGCAAGCACTGGACGTGTTCAATCAAATGCAGGAGATGGGATGTGAGCCTGATCGTGTTACTTACTGCACACTCATTGATATCCATGCAAAAGCTGGATTTCTTGATGTGGCTATGTCTATGTATGAAAGAATGCAAGAAGTTGGCCTTTCTCCTGACACATTTACATACAGTGTCATGATCAACTGCCTTGGGAAATCTGGTAATTTAGCTGCTGCCCATAGACTATTTTGTGAGATGGTTGATCACGGTTGTGTCCCTAATATTGTCACGTACAATATCTTGATTGCTTTGCAAGCTAAAGCAAGAAACTATCAGACGGCATTGAAACTATACCGTGACATGCAGAATGCAGGATTTAAACCTGACAAAGTTACTTATAGCATTGTAATGGAGGTGCTTGGCCACTGTGGGTATCTTGAAGAAGCAGAAGCAGTTTTCTTTGAGATGAAACAGAACAATTGGGTTCCTGATGAGCCTGTTTATGGTCTTCTGGTAGACCTGTGGGGAAAGGCTGGTAATGCTGAGAAGGCTTGGGAATGGTATGAGGCAATGCTTAGAGCAGGTTTGCTTCCAAATGTACCAACTTGCAATTCGCTTCTCAGTGCATTCCTCAGGGTGCACCGATTGCCAGAAGCATATAATCTTCTCCAAAACATGGTGACTCTTGGCTTAAACCCCTCTTTGCAGACTTACACTTTGCTTCTCAGTTGTTGTACGGAGGCACAATCACCATATGACATGGGATTTTGTCGTGAGCTTATGGCAGTCACGGGTCATCCAGCACATGCATTTTTACTGTCCATGCCAGCAGCAGGACCTGATGGTCAAAATGTGCGGGATCATGTGAGCAAATTCTTAGACCTTATGCATTCTGAGGATAGAGAGGGCAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTTCTTCACAAAGCTGGGCTCAAGGAGGAGGCCGGTTCAGTTTGGGAGGTGGCTGCACAAAAGAATGTGTACCCTGATGCTGTCAAGGAGAAAAGCTCTTGTTATTGGCTTATAAATCTTCATGTCATGTCTGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTTTGTTTCGAAGAAAGATGCTGGCATCTGGGGTTGGCCCTAACCGGATTGATATCATCACTGGATGGGGTCGGAGGAGTAGGGTGACAGGTTCTTCTCTCGTGAGACAGGCAGTGCATGAACTGCTGCATGTATTCAGTTTCCCATTTTTCACAGAAAATGGCAATTCAGGTTGCTTTGTGGGATGTGGGGAGCCTCTTAGTCAATGGTTGCTCCACTCTTATGTGGAACGAATGCATTTACTGTAG 2652 0.4438 MQNMLRAKQISSTLSSNARSFFLSGSRCNAGDGNSCTCPEDETCVSRGQQRKNEDLLVQKSPSLVSKTSSQVVGTLVSGTLANGPASHTAAAGSVDQSGCVQKIQSTSYAPSKSDSVTYACVVDGVQDHVAHSSSLNADQFYRAGIAAVNFLSDIVNYKFPLSDGMGILNYSKNYMVDPARTLPNIRSSNVQQIRKENFTAVHPKPPVSAQQGPSNHPNNHGGAKGKGDRSNLAKGFKHVASSGREKSGAAPNIPLNNYDRKALPQRTRTHGSRFVTNFGSNVQTSNPQMLGSFKESFNKHPRDVSMPARIGPTNRHFSNSGHVVEVVKDILQRLKWGPATEEALYNLNFSIDAYQANQILKQLQDHSVAVSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCRPNVVTYNRLIHSYGRANYLKQALDVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLAAAHRLFCEMVDHGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMKQNNWVPDEPVYGLLVDLWGKAGNAEKAWEWYEAMLRAGLLPNVPTCNSLLSAFLRVHRLPEAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGFCRELMAVTGHPAHAFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVDFLHKAGLKEEAGSVWEVAAQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLALFRRKMLASGVGPNRIDIITGWGRRSRVTGSSLVRQAVHELLHVFSFPFFTENGNSGCFVGCGEPLSQWLLHSYVERMHLL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Cca03g00536 883 Pfam PPR repeat family 525 571 IPR002885 -
Cca03g00536 883 Pfam PPR repeat family 630 677 IPR002885 -
Cca03g00536 883 Pfam PPR repeat family 420 466 IPR002885 -
Cca03g00536 883 PANTHER OS03G0856100 PROTEIN 4 883 - -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Cca03g00536 883 SUPERFAMILY SMR domain-like 781 861 IPR036063 -
Cca03g00536 883 Pfam PPR repeat 487 519 IPR002885 -
Cca03g00536 883 ProSiteProfiles Smr domain profile. 783 864 IPR002625 -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 528 561 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 563 597 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 493 527 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 458 492 IPR002885 -
Cca03g00536 883 TIGRFAM PPR: pentatricopeptide repeat domain 599 632 IPR002885 -
Cca03g00536 883 SMART SMR_2 780 872 IPR002625 -
Cca03g00536 883 Gene3D - 758 862 IPR036063 -
Cca03g00536 883 PANTHER BNAA07G31720D PROTEIN 4 883 - -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Cca03g00536 883 MobiDBLite consensus disorder prediction 203 263 - -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Cca03g00536 883 Pfam PPR repeat 389 418 IPR002885 -
Cca03g00536 883 Pfam PPR repeat 599 628 IPR002885 -
Cca03g00536 883 Gene3D Tetratricopeptide repeat domain 470 571 IPR011990 GO:0005515
Cca03g00536 883 Gene3D Tetratricopeptide repeat domain 340 469 IPR011990 GO:0005515
Cca03g00536 883 Gene3D Tetratricopeptide repeat domain 572 686 IPR011990 GO:0005515
Cca03g00536 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00536 Cca-Chr3 9006506 9009859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00536 425 840 Miscellaneous Gene Families AT4G11690 25.285 1.16e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00536 - - gmx:100819996 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00536 03 9006506 9009859 Cca03g00536 03 9006506 9009859 ECH