Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00533 ATGAAGGGTGTTCTTTCCATCAGCTTTTTGTTTTGTTGCTTGTTGCTGCTTTTGGATTCTTCAATATCGCTTCCTCTATGTGTTGATTCGAGAGCACCCATTACCCTGAACAAGACACTTGGATTTTGTCCTTACAATGGAAGCACGTGTTGCAACTCCACAGAAGATGCACAGATAGAGAAGCAATTCCGAATTAGCAACGTATCTGATTCTAGCTGTGCCTCGGTTTTGAAATCAATACTTTGTGCGAGGTGTGATCCATATTCAGCGGAGCTATTTACAGTTCAATCCTCACCTAGATCAGTTCCTGTGCTTTGCAATTCCACCATAGCAGCAAATTCTTCTCAGTCAAAGACTGAAGTGGAAGATTTTTGCTCTCAAGTATGGGACACATGCAAGGATGTATCCATAGTGAATTCCCCATTTGCCCCTTCATTACAAGGCCAAGCAGGAGCACCAGTTCACACCAATGCTTCCAAACTCACTGATTTATGGCAGTCCAAAACTGACTTTTGCACTGCATTTGGTGGATCATCTGATAACTCATCAGTGTGCTTTGAAGGTGAACCTGTTTCGCTGAACAAAACTGAGACCTCTATTAGCCCCCCTCGTGGTTTGTGCCTTGAGAGAATTGGTAATGGATCTTATCTCAACATGGTGGCTCATCCTGATGGTTCTAACCGCGCATTCTTCTCAAACCAAATGGGAAAGGTTTGGCTTGCAAAACTTCCGGAAGAGGGGTCAGGAGGAAAATTGGAGCTTGATGAATCAAGTCCTTTTGTTGATCTAACTGACCAAGTTTACTTTGATACTCAATTTGGAATGATGGGCATGGCATTTCATCCGGATTTTGTGAAAAATGGACGATTCTTTGCTTCATTTAACTGTGATAAGTCTACGTGGTCAGGGTGTACAGGAAGATGTTCTTGTAATTCAGATGTTAATTGTGATCCATCAAAGTTAGGTACTGATCATGGTGCCCAACCATGCCAATATCAAACTGTTATTGCAGAGTATTCTGCTAATAGCACTGCATCTCAGCCTTCCTCGGTGGAAAGTGCTAAACCAACTGAGGTAAGAAGAATATTTACCATGGGGCTCCCATTTACATCTCAACATGGAGGTCAAATACTCTTTGGACCTGATGATGGGTATTTATACTTCATGATGGGATATGGAGGAGGTTCAGGTGATCCTTACAATTTTGCACAAAACAAGAAATCCTTGCTTGGAAAGATTATGAGGCTTGACATAGACAACATTCCAAGTGCAGCAGAAATTAGCAAACAAGGCCTTTGGGGTAACTACTCCATTCCAAAGGACAATCCTTTTAGTGAAGATAAAGATCTGCAGCCTGAAATATGGGCCTTGGGACTGAGGAATCCTTGGCGCTGCAGTTTTGATGCAGAAAGACCTTCCTATTTTTTGTGTGCAGATGTTGGACAGGATCTTTACGAGGAGGTGGATCTCATCACAAAGGGTGGAAACTATGGCTGGCGTGTTTACGAGGGCCCCTATCTGTTCAACCCCACACAATCACCCGGAGGAAATACTTCCTTAGATTCCATAAATCCAATTTTCCCAATAACGGGGTACAACCATTCAGAAGTAAACAAGAATGAAGGATCAGCATCCATCACTGGAGGATATGTCTATCGATCCACCACTGATCCTTGCATGTATGGAAGATACTTGTATGGAGATCTATACGCGGGTGCAATATGGACATCCACAGAGAACCCACAAAACAGTGGAAATTTCAGCACAAGCAAAATTCCCTTCAGTTGTGCACGTGATTCTCCTATACAGTGTGACTCTGCACCTGGAAACACCCTTAAGCTTCCTGCATTAGGCTACATCTTCTCATTTGGTGAAGACAACAAGAAAGACGTTTATGTGCTTGCAAGCAGTGGCGTTTACCGAGTTGTTCGTCCAAGTCGATGCAGTTATGCTTGCTCTCAAGAAAAGGCAACAACTTCTACAACCCCACCTCCTTCTCCTTCTCCTTCTCATGCTAGTGTCCTTTCTGGGTATCTGGTTTTGCAGTTCTCGTCTTTGTTGCTGCTTTTGTTGGGTTTTGTAGAGTGGTTATGA 2094 0.4317 MKGVLSISFLFCCLLLLLDSSISLPLCVDSRAPITLNKTLGFCPYNGSTCCNSTEDAQIEKQFRISNVSDSSCASVLKSILCARCDPYSAELFTVQSSPRSVPVLCNSTIAANSSQSKTEVEDFCSQVWDTCKDVSIVNSPFAPSLQGQAGAPVHTNASKLTDLWQSKTDFCTAFGGSSDNSSVCFEGEPVSLNKTETSISPPRGLCLERIGNGSYLNMVAHPDGSNRAFFSNQMGKVWLAKLPEEGSGGKLELDESSPFVDLTDQVYFDTQFGMMGMAFHPDFVKNGRFFASFNCDKSTWSGCTGRCSCNSDVNCDPSKLGTDHGAQPCQYQTVIAEYSANSTASQPSSVESAKPTEVRRIFTMGLPFTSQHGGQILFGPDDGYLYFMMGYGGGSGDPYNFAQNKKSLLGKIMRLDIDNIPSAAEISKQGLWGNYSIPKDNPFSEDKDLQPEIWALGLRNPWRCSFDAERPSYFLCADVGQDLYEEVDLITKGGNYGWRVYEGPYLFNPTQSPGGNTSLDSINPIFPITGYNHSEVNKNEGSASITGGYVYRSTTDPCMYGRYLYGDLYAGAIWTSTENPQNSGNFSTSKIPFSCARDSPIQCDSAPGNTLKLPALGYIFSFGEDNKKDVYVLASSGVYRVVRPSRCSYACSQEKATTSTTPPPSPSPSHASVLSGYLVLQFSSLLLLLLGFVEWL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00533 697 PANTHER HIPL1 PROTEIN-LIKE 1 684 - -
Cca03g00533 697 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 205 575 IPR011041 -
Cca03g00533 697 Gene3D - 212 614 IPR011042 -
Cca03g00533 697 Pfam Glucose / Sorbosone dehydrogenase 221 526 IPR012938 -
Cca03g00533 697 PANTHER HEDGEHOG-INTERACTING PROTEIN 1 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00533 Cca-Chr3 8968402 8973933 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00533 - - gmx:100778890 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00533 03 8968402 8973933 Cca03g00533 03 8968402 8973933 ECH