Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00506 ATGGCGCCACGCGTACTTCTTGTGTTCGGGATGTTGCTGCTAGTGTCCCTTGTTAAGGTTTCATCTGATCTAaagatagaagaagaagaagaaCTGCACTTTCCTAATGAGCCACTTATCGTGAGAGACGGGAACAGAAGGCTGATGCAAGACTTAGATTGTGGTGGGTTGTGCAAGTCTCGGTGCAGTTCTCATTCGAGGCCCAACCTGTGCAATAGGGCATGTGGGACGTGCTGTGTGAGGTGCAAGTGTGTCCCACCTGGTACTTCTGGAAATAGAGAACTCTGTGGAACATGCTACACTGATATGACCACCCATGGCAACAAGACCAAGTGCCCTTAG 342 0.4737 MAPRVLLVFGMLLLVSLVKVSSDLKIEEEEELHFPNEPLIVRDGNRRLMQDLDCGGLCKSRCSSHSRPNLCNRACGTCCVRCKCVPPGTSGNRELCGTCYTDMTTHGNKTKCP 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00506 113 Pfam Gibberellin regulated protein 53 113 IPR003854 -
Cca03g00506 113 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 4 113 - -
Cca03g00506 113 PANTHER PROTEIN 3, PUTATIVE-RELATED 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00506 Cca-Chr3 8344269 8345136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00506 - - gmx:100305516 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00506 03 8344269 8345136 Cca03g00506 03 8344269 8345136 ECH