Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00481 ATGAACACTCActtcttcttcttcttctgcttcttcttGTCGCTCTCATCTTTCCATGTTTCTCGAGCAACAGAAGGAATGCCTCTGCCCCAAACGCGCCACTATTCCAAACAGAACAACATCAACCCGTTCACCCCCAAAGCCTCTCTCATTCGCTACTGGAAAACTCGCGTTTCAAACGAGCTTCCCATCCCTCAATTCCTTCTCTCCAAAGCTTCACCTCTCACTCCACAACACTACGCCACGCTCAACAACCTCCTAAACCGAAAACCCAAACCCTTCACTCCCAAGCTTCACCACTCTCTCTGTTCCTCACCCAACTTACTCTGTTCCTTCGACGACACACCACCAAACACGCCCCGACGCAAAAGCGACGACGCCAACTTCGCCGTTTACAACAACAAACGCTTCGCCAACTACGGCTCGTCCCGAGTCGGCGGAGTCGACTCGTTCAAAAACTACTCCAACGGCCTAAACGCCAACAACGACGCGTTTAGAAAATACAGCGCCGCCGCAACGCGCCACAGCGGCCAGTTCAAGAACTACGCCGACAACGGCAACGTCGCCAACACGAACTTCTCCAGCTACGGCTCCGGCGCGGCGGAAACCTCCAGCGACTTCAACAGCTACGACAAAACGGTCAACGTTCCGAATCTAGGTTTCACAACCTACGACTCCGGCGCCAGCAATCACAAACTCTCGTTCTCGAGCTACGGCAACGAAACGAACTCCGGCTCGCAGTCTTTCACTAGCTACGGAAAACGCGTTCGCGGCGGAACCAGCGAGTTCGCGAATTACGCCGGCGACGCGAACATTCTCCAATCGGAGTTCAACAGCTACGGCGACTTCAGCGCCGGAGCGAGCAACGACACCTTCAAATTCTACAGCCTCAACGGCAACAATCCGCGGCACGTTTTCAAAAGCTACGGCGCCGGATCCTCCGGATCCGCCGCGGATAATTTCCTCAGCTACCGCAACCGCGCCAACGTCGGCGACGACTCATTCCAAAGCTACGCCGCGAAGTCGAACTCCGGCGCCGCCACGTTCGCAAACTACGGCATGTCGTTCAACGTCGGAAACGACAGTTTCGCGGAGTACGGAAAGGGCGCGTCGGGGAAAGCCTCGTTCGGATTCAAATCATACGGTCTAGGCCGCGCGTTTAAGTTTTACAACAAAAACGGCGCGTCGTTTTCGGAGTATCGCAATTTCAGCGCATCCAGTGGCAAAACCGTAAATAAATGGATCGAACCGGGTAAATTCTTCAGAGAATCAACCATGAAGGAAGGGAAGGTTATGGTAATGCCTGATATTAAAGATAAAATGCCTGCAAGGACGTTTTTGCCCCTCTCTATTGCGTCGAAATTACCGTTCTCGTCGTCGAGGATTGAGGAAATGAAGGAGGTGTTTCACGCGCGGGAAGCGTCTTCCACCGAGCGCGTGATGGTGAACGCTTTGAAAGAGTGCGAGAGGGCACCGAGCAAGGGCGAGACGAAACGGTGCGTTTCGTCCGCGGAGCAGATGATAGATTTTGCGGTATCTGTGGTGGGTCCCAACGTGGCTTTGAGATGGACGGAGAATGTGAACGGGTCAGGATCGAGTGTGATGATTGGGAGAGTCTACGCAGTGAACGGTGGAAAAGCGATCAAAGCGGTTTCATGTCATCAGAGTTTGTACCCTTACTTATTGTATTATTGCCACAGTGTGCCCCTAGTGAGAGTGTACGAAGCTGATATTCTGGACGTGGACTCCAAGGAGAAGATCAACCATGGGGTTGCCATCTGTCACCTTGACACGTCAGCGTGGGGCCCTCAACATGGGGCGTTCTCCGCGTTGGGGTTTGGCCCTGGCAAAATTGAGGTGTGCCATTGGATATTCGAGAACGACATGACTTGGACCACTGCTGATTGA 1908 0.5278 MNTHFFFFFCFFLSLSSFHVSRATEGMPLPQTRHYSKQNNINPFTPKASLIRYWKTRVSNELPIPQFLLSKASPLTPQHYATLNNLLNRKPKPFTPKLHHSLCSSPNLLCSFDDTPPNTPRRKSDDANFAVYNNKRFANYGSSRVGGVDSFKNYSNGLNANNDAFRKYSAAATRHSGQFKNYADNGNVANTNFSSYGSGAAETSSDFNSYDKTVNVPNLGFTTYDSGASNHKLSFSSYGNETNSGSQSFTSYGKRVRGGTSEFANYAGDANILQSEFNSYGDFSAGASNDTFKFYSLNGNNPRHVFKSYGAGSSGSAADNFLSYRNRANVGDDSFQSYAAKSNSGAATFANYGMSFNVGNDSFAEYGKGASGKASFGFKSYGLGRAFKFYNKNGASFSEYRNFSASSGKTVNKWIEPGKFFRESTMKEGKVMVMPDIKDKMPARTFLPLSIASKLPFSSSRIEEMKEVFHAREASSTERVMVNALKECERAPSKGETKRCVSSAEQMIDFAVSVVGPNVALRWTENVNGSGSSVMIGRVYAVNGGKAIKAVSCHQSLYPYLLYYCHSVPLVRVYEADILDVDSKEKINHGVAICHLDTSAWGPQHGAFSALGFGPGKIEVCHWIFENDMTWTTAD 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00481 635 ProSiteProfiles BURP domain profile. 420 634 IPR004873 -
Cca03g00481 635 PANTHER POLYGALACTURONASE-1 NON-CATALYTIC SUBUNIT BETA 6 635 - -
Cca03g00481 635 Pfam BURP domain 420 632 IPR004873 -
Cca03g00481 635 SMART BURP_2 418 634 IPR004873 -
Cca03g00481 635 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00481 Cca-Chr3 7743715 7746172 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00481 - - gmx:100784264 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00481 03 7743715 7746172 Cca03g00481 03 7743715 7746172 ECH