Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00471 GTTGATGCTGCTTTGGTGCTGCTTAGTAATATAATCTCAAATGATTTTGTAAATACATGCGTGATACCTCAAGATGTGTGGGACCTTCAGTTTTTCAAAAGACCAACATCAATATCCATCTTGTATTTCTTCTCATGTTACTTTTCACGAAAAAATTCTCATGCTGATCTCCGAGATATTTTACATTTAAGGAAAAACCTTTTAAGATCAACATTGTGTCATCTTAATTGGAAGGGTTATTCAACCTTGAACGAGCGAATGGTTTTGTTCATTGCTAGTGCTTTGTACGCACTTTGTGTAGGTTATGTTCCTTTTACTCAATGCTTTAAAGAAGTTCCTCTAGTTCACAACTATTTTGACGTCATTGATACTCAAGATGACTCTCATAAGTTTGAAGACCCCAAACAGCAATGTCTACTTGAGTTTTTGGATTGCTCTCTGGAAGTTCTCACAGAAATTGACAAGATTTCTAAAGCTGAGGTTCCCCAAGTGAAAGTACGTCCACATGTTCGGGTTCCCCGGGAAATAAGTGAGCAGCTATTGCGTGAAATGGAGACCTCTATTCTTGGAGCTTTGGTGGAAGATGAGATTAAAGAGAGGCGTTTGCCTGATACTTTCTTAATATGTTCTCTTTTGTCTAACCTACTTTATGGTTATTTTTTCACAAGGAAAATTAATGTTTCATTTTGTTCAAAATTAAGCCAATATTTGCAACTGATGCTTGACAATGCTGTAAGAATTATTCAAGAAGACAGTGACCTCCGGGCTTTTAGTTGCTTAGGTTATGATCCAACTTGTGATGATATGGGTCCTCTTGTTTCTTCCATTCATTGTTTTCTTTCATCTCCTATATTTAATGAATTGAGGGATCAAAATTTGATGGGCTTTGTCCCATTTGACGAGTTAATCCAATCTGTAGAAAGACTCTTGAAGGCTTTTGTTAATCTATATGAAAGTTATTCTCGGGATATGATGAATCATCAGTCTGATACAATCATACCAGATATGGCCGCTACTTATAGTATTCAAAGTTCTTGTCCAAATGCCAGTAGCAAAAGCAGGATTATGGATTGGGATTTGGATGTTAATGAAGATTCTAAAGAGGTTGACAGTTTACCTGTTGGTAAAAAAGTAGGCAGTGATGTTTCATCTTCTTCAGAAAAATGGAAAATGGGCATGATATCCCTTATTTCCAGTTTTTTCTCTGCTTCGGCACTTACATGGGATATCCTATTTAAGCTAATGGAGAAAGAAAATGATTCTAAGGTGCGTGGGAAAATATTGTATCATCTCTGTCAACATCCTCTATGGTCTTCTTCTGAAAAATTTATTAATTTGGTCAATATAATGAGTGATATCATTATCGAGCAAGTTGAACTTAAGCTTGCTTGTGATAATGTATTGACTTCTACTCATACTTTACTAACTAACTTGTCTTCCCTTGATGATGTTGGTAAGGACAAATGTGGCCTGTATTTAATGGAAGTGGAAACTGAACAGTGCTTTCTGTCACTAGGAAAAGTGGTGCATAAACTTTCAGAAGTTGATCTTGATTGGTTTGGACGGGTGAAGCTGATTGATTGCATTTGCAATCTTGTTTTACTCCATCCTCAAATTGGTCAGACTATGATAGAACGGTTATTTTTGATGCTTAAAGATATGGACTATCGAGTTCGGTTATTCCTGGCAAGGAGGATTGGTGTTCTTTTCCAGACATGGGATGGTCACGAGGAGCTTTTTCAGGACATTTGTTTGAATTTTGGTGTTCAGATGGTCGTTTATTCCAAAGGAAAAGTCATTGATGCGAAGGAGGTGCTAGCTGCTGGTCCTCAGCCTCAACCTATAATGGAAACAGTTGTGGTTACTCTTATGCATCTTGCTTTACAGAGTGAGAAGATTGAGTTAGAGGCTGTTTTCATGATATGTGTGATTTCGGCCATTGATCCTTGTCATAGGGAATTGGTCTCTATGGTACTCAACAATATTTCTAGAGAGCTTCAGTACATGAATAGAATGAAGTACCTAGAAGAGCTTTTTGGATCAATTATCTTTTGTTGGGTAGCTTGTGGTGTAAACTTAGCAGCACTTGTTGAGACAAGGCACCTTTTCTTACCCGATGCAGAACCTGATCATTTCCTCCAATATTGTTGTCCATGGCTACTTCCTGCTCTTCTTATCAATGAAAACAGTTCTGATCTCAATTGGGTTGCCAAGGTCACTTGTCAACCTTTGACAGTTCTTATAAAAAACCACTTCACATCGATATTTTCAATTTCTATGGCTTTGCATTGCAGTAAGAAACCGGGATCTGAGAAGGGAACACTAGTGCTTCAGAGTTCCATTTTGCATTTTGCACAGATATCTGAGAAAGAACGAGACAAACTCATAAAGAGACACATGGTCTCTATTGTCAGCTGCGTTTTATCTTTGTGCTCTTGTTCATCAAATGCCATAGCCCCCTTTTTTTCAAGGGAAACAGTGTTGCTTGAAATTCAGACAATTGTTGATGGATTTTTGGATTTGGATGATAATCATGCAAGTGCTTCTGTTGTTGACAAGATCAACATTTTTCGCCCAGATAGAGTTTTCATGTTTTTGGTAGAAATTCATTTTAAAATTGCAGCAGCATCTCATTACAGGCATAAGTGCCATCGATTGGCTGGAATTGAGGTTCTTATTAGTATTCTTGGTCAGAGAGCTTCTGTTTTAAGCACTTCCAATTACCTTTTCAATTTGATGGGGTCCTTGATTGAATGTCATGCTTTACAAGACCAATGTTGTCGTATACTTTCTGCATTGTTGCTACATTTCAAAAATAATCTATCTGCAGAAGCGACCAGTATGCTTGGGGAACAGCTCCAGTTTCTTGTTTCCAAATTGGTGGAATGTTGCATTCCTTCTAAAACCAAAGAATCGTATGATAGCACTGCATCACAGGCTTTATCTCTGCTCCGAATCTTAACTGTGGATTCTGATTCATCTATGTATGATTATGTTAAAGAATTGGAGCCATTTCCTGAATTAAGAATATTTGATGAGATAAGTAAGTTCCATGAAGAATTATGCCACACTTACTCTATACGCGGCCACTTATTGAAGTTTGTAAAGAAGTCTTGCTACCTTCCGCCAAGGTTTCTTTTATCAAGTCTCCAGGCATTGCACAAGAAGTTAATGAATGTAGAAGCATTTCAAAGAGGAGGGGAAGCAGAAGTCTACTTTAAAGACAAATATTGGCATGGTGATCATGAAATTGTGCATGCAGTCTGGAAACTTTTTCACATGTGTGGCTCTGATGATGCAAATGAAGCTCGAGAATTGGTTTCAGATTTCATTTCTAGGGTTGGTGCTGGAGACCCATACTCTGTTGTTTTTCATCTTCCTGGCGAGATTAGCCATATTCGTCTTGGTAAATCTACTGATATCAGCAGGGCTATGGAAGTCAGTTCTGACTCGGATGGAATACTTTCAACTGAAAGAGGCCAAAGTGCTTTACAGTCATTTGATTCATATCAGAAGTCTCTAATTGAGGTGCATTCCAAAGGTGTCAACATTGAACTAGTAGAAAATCTCCTTATGGATCAAGAAAGGAAGTCGAAAGCTGAAGCAATTTCATTGGAGAAGTCCACTGTGTGGGAGACAGATGGTAAAACTTTTGAGATCTGGATTTGTCCGTTGGTGTATTCACTTATTGTGTACTGCAATGACATTATCCTAAGGTTGTGTCAAGATATTATATTGTTTAAAGGTGAAGTTGCAGAGCTTCTTTTGCCAAGTATTTTTGTCAATATATCTGCAAGGAAGGATCTGGAGATCGATCTTCACAAATTAATCTGTCTGCAGTTGAAGGAGCATATATTTGTAGAGTCGAATAAGTTGATGAAATCCATTCAAGTGGTTTTGAATTGTCTTAATGAACTTCGAATTCGTCATGTCATGGAGAGATCTTCATTTGTGCCGTCAAGGCGTGATGTGTCAAAGAATTCAAGGCCTTCAAGTTATAATTCTAAAACCCGGTCCACTCCTGCAAAGGCAAGAGAATCTGCAGTTGTTTCAAGTGCCTTGGCAAAGTTAACGCCCTCATGGGAGAAAGTTTATTGGGTCTCCATTGACTATCTACTTGTTGCCAAGTTGGCAGCTAGTTGTGGATCATATTTTACTTCAGTGATGTATGTAGAACATTGGTGTGAAGAGCAATTTAAAACTTTGACAATTGGAGGTCCAGATTTCTCCCAAAATGAAATGTTGCCAGATCATATTGAAATACTTGTTTCGGCAGTCACTAGAATCAATGAACCAGATAGCTTATATGGAATTCTTCAGTCTCACAAGTTGGCTTCTCAAATAATCACATTTGAGCATGAGGGAAACTGGGGGAAGGCCCTGGAGTATTATGACTTGCTAGTGCAATCAGATGCCTCTGTACAGAAGGATGTTAGTTCAAGAAGTCTGTCATTGGAACAAAGAGGAACATCAAATCGTTCATCTTTTGCCTCAGAGGATGAGATGACCCAGAGTAGACCTTACAAAGGGTTGATTAGATCACTACAGCAGATTGGCTGTACACATGTGCTTGATATGTATTGTCGAGGCTTGACATCAAGCAACGACCAACTTCAGCACGATTTAGAGTTTGCTGAATTGCAATATGAGTCTGCCTGGCGTGCTGGGAACTGGGATTTCTCTTTACCATGTGTAGGAACTAATTTTCTTCCATCTCCAAATATCAAATGTGATCATTTCAATGAAAATTTGCACAGTTGTTTAAGGGCACTTCAGGAGGGTGATTTGAGTGATTTCCAGAGAAAACTGAGAGATTCAAAGCAGGAGCTTGTGTGGTCTGTCTCTCATGCAAGTGAGGAGAGCACTGAGTACATTTACCTGACTATCATTAAACTCCAGATGCTTTATCATCTTGGCATGGCTTGGGATTTACGTTGGAGAACTTGTCAAGATAATAGCACCAAGTTTTGTCTGCTGAAACAAAATGTTTCTCCTGAGCCTGTGATTCCTTCCATTGACCAGTTGTCATGGCTAGATATGGAGTGGTGCTCAATTTTGCAAAGGACACAGTTACATATGAATTTGCTAGAACCATTTATAGCATTTCGACGAGTTCTACATCAAATTTTAAGTTCTAGAGATTGTATGCTGCAACATCTTCTGAAGTCTGCAACCACACTTCGTAAGGGATGTAGGTTCTCTCAAGCAGCTGCTGCTTTGCATGAGTTTAAACTCCTTTCTGTTGAAACCAAAGGGCAATGCTCATCCTTATATTGGCTTGGAAGGCTTGAAGAAGCAAAACTTTTCCGTGCTCAAGGTCAAAATGTGATGGCTATCAACCTTGCAATGTATATATCAGAAAATCATTACTCTAATCAGGAGGCTTCAGATGTATATCGGCTGATTGGGAAGTGGCTGGCAGAAACCAGATCTAGCAACTCAAGAACAATTTTGGAAAAGTATTTGAAACCTGCAGTCTCTATTACTGAGGATGTGAATGCTACAGCTAAGAATGCCATCAAAAGGCAATGTCAGACTCATTTTCATCTTGCACACTATGCTGATGCTCTATTTAAAAGCCACGAGGAAAGACTTAACTCTAATGAATGGCTAGCAGCAATGCGTTTAAGAAAGCATAAGACTGTGGAGTTGGAAGCACTTATAAAAAGGTTACGGAGTTCCACAAAGATGGAGAAAACTGACTACTCAATGAAAATCCAAGAACTGCAAAAGCAAGTAGCAATGGACAAGGAAGAAGCACAAAAATTACAGGATGACCGTGACAATTTTCTTAGCCTGGCACTCGAGGGATATAAACGTTGTTTAGTCATAGGCGACAAGTATGATGTGAGAGTGGTGTTTCGAATTGTTTCTTTGTGGTTCAGTCTTTCTTCACAAAAAGATATTGTAAATAACATGCTGAGCACAATTGATGAGGTCCAATCTTTCAAATTTATACCCTTAGTATACCAAATTGCCTCTAGAATGGGTAGCTCAAAGGATGGTCAGGGACAACTCAATTTCCAGTTTGCATTAGTTTCACTTGTGAAGAAAATGGCCATTGATCATCCATACCATACAATACTTCAACTCCTGGCACTGGCAAACGGAGACCGTATCAAGGACAAACAGCGTAGTAGAAGTTCATTTGTGGTTGATATGGACAAAAAACTTGCAGCAGAAAACCTTCTGAATGAGTTGTCCTCTTATCATGGAGCTATCATACGACAAATGAAACAAATGGTGGAGATTTATGTCAGACTTGCTGAGATGGAAACAAAGAGAGAGGATACCAATAAAAAGGTTACACTACCAAGGGACCTGCGTAACCTCCCAGTGCTAGAACTTGTACCTGTAGTGACAGCTACAATTTCAGTCGATCATAGTTGTCAGTATCATGAAGGCACTTTTCCATACTTCAAAGGATTAGCCGATTCAGTTATGATAATGAATGGTATAAATGCCCCGAAAGTGGTTGAATGCTTGGGTTCTGATGGCCACAGATATCGGCAACTTGCAAAATCTGGAAATGATGATCTAAGACAGGATGCTGTAATGGAACAATTCTTTGGTTTGGTTAACACATTCCTGAGGAACCATCAAGATACATGGAAAAGAAGGCTAGGAGTACGCACCTACAAGGTTGTTCCTTTTACACCGAGTGCTGGTGTTCTTGAGTGGGTTAATGGAACTCTTCCTCTCGGCGAATACCTTATAGGGAGCATGAGAAATGGAGGTGCCCATGGTCGCTATGGAATAGGAGATTGGTCATTCCTTAAATGCCGAGAGCACATGGCAAATGAGAGGGACAAGCGCAAAGCATTCCAACAAGTTTGCAATAATTTCAGGCCTGTTATGCATTACTTTTTCTTGGAGAGATTTTTACAGCCAGCTGAGTGGTTTGAAAAGAGACTTGCTTATACCCGAAGTGTTGCTGCTAGTTCTATGGTTGGTTATATTGTTGGTCTTGGAGATCGACATTCGATGAATATTTTAATTGATCAGGCCACTGCAGAGGTTGTTCACATAGATCTTGGTGTTGCTTTTGAACAAGGTTTGATGCTTAAGACCCCAGAAAGGGTTCCATTTAGGCTTACAAGGGACATAATTGATGGAATGGGTGTAACTGGAGTAGAGGGGGTTTTCCGAAGATGTTGTGAGGAAACACTCTCTGTTATGCGGACAAACAAAGAAGCATTATTGACGATTGTAGAAGTTTTTATCCACGATCCTCTTTATAAGTGGGCTTTATCTCCTCTGAAAGCTTTGCAGCGTCAAAAG 7281 0.3918 VDAALVLLSNIISNDFVNTCVIPQDVWDLQFFKRPTSISILYFFSCYFSRKNSHADLRDILHLRKNLLRSTLCHLNWKGYSTLNERMVLFIASALYALCVGYVPFTQCFKEVPLVHNYFDVIDTQDDSHKFEDPKQQCLLEFLDCSLEVLTEIDKISKAEVPQVKVRPHVRVPREISEQLLREMETSILGALVEDEIKERRLPDTFLICSLLSNLLYGYFFTRKINVSFCSKLSQYLQLMLDNAVRIIQEDSDLRAFSCLGYDPTCDDMGPLVSSIHCFLSSPIFNELRDQNLMGFVPFDELIQSVERLLKAFVNLYESYSRDMMNHQSDTIIPDMAATYSIQSSCPNASSKSRIMDWDLDVNEDSKEVDSLPVGKKVGSDVSSSSEKWKMGMISLISSFFSASALTWDILFKLMEKENDSKVRGKILYHLCQHPLWSSSEKFINLVNIMSDIIIEQVELKLACDNVLTSTHTLLTNLSSLDDVGKDKCGLYLMEVETEQCFLSLGKVVHKLSEVDLDWFGRVKLIDCICNLVLLHPQIGQTMIERLFLMLKDMDYRVRLFLARRIGVLFQTWDGHEELFQDICLNFGVQMVVYSKGKVIDAKEVLAAGPQPQPIMETVVVTLMHLALQSEKIELEAVFMICVISAIDPCHRELVSMVLNNISRELQYMNRMKYLEELFGSIIFCWVACGVNLAALVETRHLFLPDAEPDHFLQYCCPWLLPALLINENSSDLNWVAKVTCQPLTVLIKNHFTSIFSISMALHCSKKPGSEKGTLVLQSSILHFAQISEKERDKLIKRHMVSIVSCVLSLCSCSSNAIAPFFSRETVLLEIQTIVDGFLDLDDNHASASVVDKINIFRPDRVFMFLVEIHFKIAAASHYRHKCHRLAGIEVLISILGQRASVLSTSNYLFNLMGSLIECHALQDQCCRILSALLLHFKNNLSAEATSMLGEQLQFLVSKLVECCIPSKTKESYDSTASQALSLLRILTVDSDSSMYDYVKELEPFPELRIFDEISKFHEELCHTYSIRGHLLKFVKKSCYLPPRFLLSSLQALHKKLMNVEAFQRGGEAEVYFKDKYWHGDHEIVHAVWKLFHMCGSDDANEARELVSDFISRVGAGDPYSVVFHLPGEISHIRLGKSTDISRAMEVSSDSDGILSTERGQSALQSFDSYQKSLIEVHSKGVNIELVENLLMDQERKSKAEAISLEKSTVWETDGKTFEIWICPLVYSLIVYCNDIILRLCQDIILFKGEVAELLLPSIFVNISARKDLEIDLHKLICLQLKEHIFVESNKLMKSIQVVLNCLNELRIRHVMERSSFVPSRRDVSKNSRPSSYNSKTRSTPAKARESAVVSSALAKLTPSWEKVYWVSIDYLLVAKLAASCGSYFTSVMYVEHWCEEQFKTLTIGGPDFSQNEMLPDHIEILVSAVTRINEPDSLYGILQSHKLASQIITFEHEGNWGKALEYYDLLVQSDASVQKDVSSRSLSLEQRGTSNRSSFASEDEMTQSRPYKGLIRSLQQIGCTHVLDMYCRGLTSSNDQLQHDLEFAELQYESAWRAGNWDFSLPCVGTNFLPSPNIKCDHFNENLHSCLRALQEGDLSDFQRKLRDSKQELVWSVSHASEESTEYIYLTIIKLQMLYHLGMAWDLRWRTCQDNSTKFCLLKQNVSPEPVIPSIDQLSWLDMEWCSILQRTQLHMNLLEPFIAFRRVLHQILSSRDCMLQHLLKSATTLRKGCRFSQAAAALHEFKLLSVETKGQCSSLYWLGRLEEAKLFRAQGQNVMAINLAMYISENHYSNQEASDVYRLIGKWLAETRSSNSRTILEKYLKPAVSITEDVNATAKNAIKRQCQTHFHLAHYADALFKSHEERLNSNEWLAAMRLRKHKTVELEALIKRLRSSTKMEKTDYSMKIQELQKQVAMDKEEAQKLQDDRDNFLSLALEGYKRCLVIGDKYDVRVVFRIVSLWFSLSSQKDIVNNMLSTIDEVQSFKFIPLVYQIASRMGSSKDGQGQLNFQFALVSLVKKMAIDHPYHTILQLLALANGDRIKDKQRSRSSFVVDMDKKLAAENLLNELSSYHGAIIRQMKQMVEIYVRLAEMETKREDTNKKVTLPRDLRNLPVLELVPVVTATISVDHSCQYHEGTFPYFKGLADSVMIMNGINAPKVVECLGSDGHRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHQDTWKRRLGVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGIGDWSFLKCREHMANERDKRKAFQQVCNNFRPVMHYFFLERFLQPAEWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQK 2427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00471 2427 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 2427 - -
Cca03g00471 2427 MobiDBLite consensus disorder prediction 1319 1340 - -
Cca03g00471 2427 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 2427 IPR038980 GO:0004674|GO:0006974
Cca03g00471 2427 SUPERFAMILY Protein kinase-like (PK-like) 2077 2425 IPR011009 -
Cca03g00471 2427 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 2143 2427 IPR000403 -
Cca03g00471 2427 ProSiteProfiles FAT domain profile. 1373 2037 IPR014009 -
Cca03g00471 2427 Pfam Phosphatidylinositol 3- and 4-kinase 2176 2416 IPR000403 -
Cca03g00471 2427 MobiDBLite consensus disorder prediction 1321 1340 - -
Cca03g00471 2427 MobiDBLite consensus disorder prediction 1483 1502 - -
Cca03g00471 2427 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 2310 2330 IPR018936 GO:0016301
Cca03g00471 2427 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 2173 2188 IPR018936 GO:0016301
Cca03g00471 2427 Coils Coil 1899 1926 - -
Cca03g00471 2427 CDD PIKKc_ATM 2140 2417 IPR044107 GO:0004674|GO:0006281|GO:0006974
Cca03g00471 2427 Gene3D - 2274 2427 IPR036940 GO:0016301
Cca03g00471 2427 Gene3D - 2068 2228 - -
Cca03g00471 2427 SMART pi3k_hr1_6 2170 2427 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00471 Cca-Chr3 7448087 7545338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00471 2289 2426 Lipid Metabolism Gene Families AT5G09350 25.000 1.29e-06 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00471 K04728 - gmx:100788458 4388.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00471 03 7448087 7545338 Cca03g00471 03 7448087 7545338 ECH