Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00459 ATGAACGGCCGAGGCGAACTCGGTTCTCCGGATCCATGCGATTCCTTCCCTCCGCTACGCGTCCGCCGATCGGACGCCGCCGCCTCGCGCCACTCCTCGTGCGGCGGCGATTCCGAGTTCGAGCGCTACTGCAGCGCCAACTCCGTCATGGGAACGCCCAGCACCAGCATGAGCCTCTGCAGCGCCGTCACGCTCTTCCACGATTTCTCCGATTTGGATTTCGATAATTTCAGTTTGGGGAAAggagcgcagccggagcccaatcggaaccggagccggaCCTTCAGGTACGGTTCCAGTGGTTTGGAGTTCTACGGTGATTGCAGCGACGAACTCGCCATCACCGCGCTCGATTCGTCGGAGTCCATCGCGTTTAACCGGAATGAAGAGTCCGAGGTGAACGTTGGAGAAGGTGGTGTAAAAGAGGAAAAACGagaagaagaagaagaaggagaagaggaagaggaagatgacgaagaagaagaGTTCTCAGAGGGTGATGATTCTATGTATAACTACGGTAGTGATGATGATGGTCGAAACGAAACGTCTTTGTCGAATATTATACATTATCGTGAGGAACCGGAAGTGAGAAACGATAACTCTTTGTTTATGAATTCTTCCGTGGCCTATGGTTCCATGGACTTGGATGATTTTTTGCTGCAAAACGGTCCCGTTTCTGTTGTGTCTGATCTGTTTCGCAATCAGCGAAAAATGAACGATGGAGTGAATTCAGGTTCTGGTCAAAAGGAGGGAGCGAAAGATGACAAGGACAATGTCACAGTTAACGAGGTTGAAGAAACAAAAGAACTTGGTTGTTCTGATGGTATAGAAGAGGTTAGGGATAGGGAAGTTGATATGCTTGCTAACCTAGGAGAAAGTTCTACCTCAATTGATTTTGGGAACAGTTTCGAAAAGCATGTTCAAGGGTCTGATGATTTGGTTAGTTGTTCTAAAACTGCTTCTGTTGCCAACGTGGATGAAGTTGATTTGGATCTTGTGGCGGAAGAAGCTACTCGGAATACGAGTTTGAATGTGAGTGGTGGTGGTAGCATGGAAAAGGGGAATGTCAATGTCAACAGTATAGAAGCTATTGCTATTAGTGATGCTCAGTGTGTAAAGTTAGAGGTGGATGATTCTATGTTCAAGCTTGATCGCAATAATGATAGCCGAATTGATGAAACTTCTTCCAATCCATCCAACTGTCCTGGGAATGTTATTGCAAAATCATCTGAGAGTCTTGAACAAGCTGTGCCACCTTTGGACAGTGGAATGAGGAAAGCATTACATCTTGGGAATGTTGATGCAAAATCATTTGAGAGTCCAGAAAAATCTGCGCCACCGTTGGACAGTGGAACGAGGAAAACATTAGAGAGCTCTTCCACTTCAACAGATCTCTTTGAAGAACGTCCTGTGGTATCCATGATAGAAGACTTTGAGCTAAATGAATTCTATGACGAGGTTGTTCAGGAAATGGAAGAAATTTTACTGGAATCTGTGGATTCTCCTGGGGCCAGGCTTTCCATGGGTAACAGATTGGCTGATCGTCAATTTTCTATGCCTTCGAGAGATGGTGGGTTGACTGCTTCTACTTCTAGTACAGATGATGCTTACCTGCTAGTTCAGCGCCCAAGAAGAATAGATAGGATTGAAGTGGTAGGTGCAAGGCAGAAGAAAGGTGATGTTTCTTTCAGTGAAAGATTAGTTGGGGTGAAGGAATACACGGTGTATAAAATAAAGGTGTGGAGTGGCAAGGATCAGTGGGAGGTTGAAAGGAGATATCGTGATTTCCTTACTCTCTATCGTTGCATGAAAACCTTATTCAATGAACAAGGCTGGAAATTACCTTTGCCATGGGCTTCTGTTGAAAAGGAAACCCAGATATTTAGAAGTGCATCTCCTGATATTATTGTAAAGAGAAGTGTTCTCATTCAAGAGTGTTTACAGTCTATTCTCAGTTTCAGGTTCTCTTTAAGTCCTCCAAGAGCATTGAATTGGTTTTTGTCTGATCAAGATTCATATCCTATTTCACATGTGTCAAATGGACTAGTGTCTCAGTCTTCTTTTACAAGAGGGGAAAATATTCAAAACATTTCCAATTTAGGGAAGACAATTTCACTTATAGTTGAAATTCCACCAAACAAATCTGTGAAACAGTTGTTAGAAGCACAACATCACACCTGTGCTGGATGCCGAAAGCATTTTGATGATGGAAAAACTTTGATTTGGGATTTTGTACAGACATTTGGATGGGGGAAGCCTCGACTTTGTGAATACACTGGCCAGTTGTTTTGCTCTTCTTGCCACACAAATGAGACTGCAGTCTTGCCAGCCAGGGTTTTACATCATTGGGATTTCACTTATTATCCTGTTTCCCAGATGGCAAAATCCTATCTGGATTCTATACATGAACAGTGTTAG 2421 0.4217 MNGRGELGSPDPCDSFPPLRVRRSDAAASRHSSCGGDSEFERYCSANSVMGTPSTSMSLCSAVTLFHDFSDLDFDNFSLGKGAQPEPNRNRSRTFRYGSSGLEFYGDCSDELAITALDSSESIAFNRNEESEVNVGEGGVKEEKREEEEEGEEEEEDDEEEEFSEGDDSMYNYGSDDDGRNETSLSNIIHYREEPEVRNDNSLFMNSSVAYGSMDLDDFLLQNGPVSVVSDLFRNQRKMNDGVNSGSGQKEGAKDDKDNVTVNEVEETKELGCSDGIEEVRDREVDMLANLGESSTSIDFGNSFEKHVQGSDDLVSCSKTASVANVDEVDLDLVAEEATRNTSLNVSGGGSMEKGNVNVNSIEAIAISDAQCVKLEVDDSMFKLDRNNDSRIDETSSNPSNCPGNVIAKSSESLEQAVPPLDSGMRKALHLGNVDAKSFESPEKSAPPLDSGTRKTLESSSTSTDLFEERPVVSMIEDFELNEFYDEVVQEMEEILLESVDSPGARLSMGNRLADRQFSMPSRDGGLTASTSSTDDAYLLVQRPRRIDRIEVVGARQKKGDVSFSERLVGVKEYTVYKIKVWSGKDQWEVERRYRDFLTLYRCMKTLFNEQGWKLPLPWASVEKETQIFRSASPDIIVKRSVLIQECLQSILSFRFSLSPPRALNWFLSDQDSYPISHVSNGLVSQSSFTRGENIQNISNLGKTISLIVEIPPNKSVKQLLEAQHHTCAGCRKHFDDGKTLIWDFVQTFGWGKPRLCEYTGQLFCSSCHTNETAVLPARVLHHWDFTYYPVSQMAKSYLDSIHEQC 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00459 806 ProSiteProfiles PX domain profile. 555 674 IPR001683 GO:0035091
Cca03g00459 806 Pfam PX domain 582 669 IPR001683 GO:0035091
Cca03g00459 806 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00459 806 MobiDBLite consensus disorder prediction 250 269 - -
Cca03g00459 806 PANTHER DIFFERENTIALLY EXPRESSED IN FDCP 8 HOMOLOG 50 805 - -
Cca03g00459 806 PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN 50 805 - -
Cca03g00459 806 Gene3D - 562 673 IPR036871 GO:0035091
Cca03g00459 806 CDD PX_domain 562 653 - -
Cca03g00459 806 Coils Coil 141 162 - -
Cca03g00459 806 MobiDBLite consensus disorder prediction 146 167 - -
Cca03g00459 806 MobiDBLite consensus disorder prediction 127 183 - -
Cca03g00459 806 Pfam Putative zinc-RING and/or ribbon 755 805 IPR025258 -
Cca03g00459 806 SUPERFAMILY PX domain 567 672 IPR036871 GO:0035091
Cca03g00459 806 MobiDBLite consensus disorder prediction 434 464 - -
Cca03g00459 806 MobiDBLite consensus disorder prediction 239 269 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00459 - - gmx:100800081 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00459 03 7216281 7223929 Cca03g00459 03 7216281 7223929 ECH