Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00456 atGGGGTCTATGATGAGTTCACAGAAAAGCAAAGAAGAGATGGAAGCAGCATTGAATAAGGCTAAGGACATAGTATCCTCCTTCCCTGTCATTGTCTTCAGTAAGACTTACTGTGGCTACTGCAAGAGGGTGAAAGAGCTCTTGACACAGCTTGGAGCATCCTACAAGGTCATTGAATTGGACACAGAAAGTGATGGGAGTGATATACAGTCAGCTTTAGCTGAGTGGACAAAGCAAAGGACGGTGCCCAACGTGTTTATTGGAGGAAAGCACATTGGTGGTTGTGACGCTGTTATGGAGAAACAGAAAGCAGATGAATTGGTTCCACTTCTCAAAGATGTTGGAGCCATCGCTAATAACTCTGCTCAACTCTAA 375 0.4427 MGSMMSSQKSKEEMEAALNKAKDIVSSFPVIVFSKTYCGYCKRVKELLTQLGASYKVIELDTESDGSDIQSALAEWTKQRTVPNVFIGGKHIGGCDAVMEKQKADELVPLLKDVGAIANNSAQL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00456 124 PRINTS Glutaredoxin signature 30 48 IPR014025 -
Cca03g00456 124 PRINTS Glutaredoxin signature 75 88 IPR014025 -
Cca03g00456 124 PRINTS Glutaredoxin signature 89 102 IPR014025 -
Cca03g00456 124 PANTHER GLUTAREDOXIN-C1 1 124 - -
Cca03g00456 124 ProSiteProfiles Glutaredoxin domain profile. 18 118 - -
Cca03g00456 124 CDD GRX_GRXh_1_2_like 29 110 - -
Cca03g00456 124 Pfam Glutaredoxin 30 92 IPR002109 -
Cca03g00456 124 SUPERFAMILY Thioredoxin-like 19 117 IPR036249 -
Cca03g00456 124 TIGRFAM GRX_euk: glutaredoxin 30 110 IPR011899 -
Cca03g00456 124 Gene3D Glutaredoxin 9 124 - -
Cca03g00456 124 PANTHER GLUTAREDOXIN 2 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00456 Cca-Chr3 7186817 7189254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00456 22 117 Miscellaneous Gene Families AT4G15700 39.583 2.55e-18 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00456 K03676 - qsu:111991481 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00456 03 7186817 7189254 Cca03g00456 03 7186817 7189254 ECH