Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00452 ATGACCATGACCGACTCCACCTCCGCCGCTCCTCTCCGATGGAACTTCTCTCAAGTACTCGGCCAACGACTTCCCGACGAGCCTCTCCAAAACGACGACGTCGTAACCACCGTCGCGTTCGAGAAGCGCGGCGATTACCTCGCCGTTGGCGATCGAGGTGGACGCGTTGTGATATTCGAACGAGACGATAGGAAAAAGAATGCGTCGAATAATCGAAGAGATTTGGAGAAGCAGGATTTCGCGACTACGCGGCATCCCGAATTTCGTTACAAGACGGAATTTCAGAGCCACGAGCCAGAGtttgattaCCTAAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGACCCACAACGGTTTGCTATTTATTCTTTCAACCAACGACAAAACAATTAAACTGTGGAAGGTTAAAGAACACAAGGTGAAACAAGTTAAAGAAATTAGCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCTGATAGGAGTTTCATACCGGGGCTGGAAACCAAGTCTGCTGCTAGTGGCTATCGTTTGGAATGGATAGAGAAAACGCCTCAAAAATTTTTGCAGTCTCAAGATATTGATGGCGAGATTGGTGGAATGGAAGACCCTTTTCGCGCAAAGTGCCAAAAGGTTTATGCTTGTGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCCTTCTCTCGGCAGACGACCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCACCAAACATGGAGGATCTTACCGAGGTTATAACATCGGCTGAATTCCATCCTTTACATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGCCTATCTGATTTGCGGCACGCAGCAATATGTGACCATGCTTCTAGGATATTTCAACATGGAGAGTGTTATGGATCAAAGTCTTTTTTTACGGAAATCACTTCATCCATCTCAGACATAAAGTTTTTAAATGATGGCCATCATCTTATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTATGGAATCATCTCCGGTCGCAATTTTCAAAATCCACGAGCATTTGCGTCCTAAGTTGCCAGAGTTATATAATAATGACTGCATATTTGATAAATTTGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACGGGTTCTTATAGCAATCTCTTGCAAATATTCTCCCCAGGTTCTGGAAAGGAGGAAAGGGTCAAACTAGAAATTAGAGGAAATTCTGACAGGAAGACTATTCACCAAGCTACGTCAAGGGTTAGAAGGCGTTCCCTTAGCAACCTAATACCTCGCGGAATTTATCAGCATGCTCACCCCGATTCACAGTCTAGTAGAGCTGACTTTTCTTGTCACTTAAGCTCCAAGCTTCTACATGTAGCATGGCATCCAACGTCCAATCTAGTTGCATGTGCTGCTGAAAGTAGCCTAGAGATTTTTCTTTCTTATGTGTTGTTCGTCTACCAACTCCGTGCTGTTCTGGGTTTTGAAGTAGAACATAGGGGAAAAGGTGGCGTCATGACTCATCAGTGGATGGTGGACAATAGCACTCCGGCAGCGTTGCACCGGCGATCTATGGTTTGGGTCTTTGGGAGAAGAAGAGACAGTAGGATACAATAG 1692 0.4379 MTMTDSTSAAPLRWNFSQVLGQRLPDEPLQNDDVVTTVAFEKRGDYLAVGDRGGRVVIFERDDRKKNASNNRRDLEKQDFATTRHPEFRYKTEFQSHEPEFDYLKSVEIEEKINKVRWWMTHNGLLFILSTNDKTIKLWKVKEHKVKQVKEISPPLCSENMLLADRSFIPGLETKSAASGYRLEWIEKTPQKFLQSQDIDGEIGGMEDPFRAKCQKVYACAHSFNINSISNNSDYETLLSADDLRINLWNLEVSDQCFNIIDMKPPNMEDLTEVITSAEFHPLHCNLLAYSSSQGFIRLSDLRHAAICDHASRIFQHGECYGSKSFFTEITSSISDIKFLNDGHHLISRNYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNLLQIFSPGSGKEERVKLEIRGNSDRKTIHQATSRVRRRSLSNLIPRGIYQHAHPDSQSSRADFSCHLSSKLLHVAWHPTSNLVACAAESSLEIFLSYVLFVYQLRAVLGFEVEHRGKGGVMTHQWMVDNSTPAALHRRSMVWVFGRRRDSRIQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00452 563 PANTHER OS02G0617600 PROTEIN 8 503 - -
Cca03g00452 563 Gene3D - 267 508 IPR015943 GO:0005515
Cca03g00452 563 SMART WD40_4 100 140 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 254 301 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 362 416 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 211 250 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 320 358 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 22 60 IPR001680 GO:0005515
Cca03g00452 563 SMART WD40_4 466 505 IPR001680 GO:0005515
Cca03g00452 563 Gene3D - 12 261 IPR015943 GO:0005515
Cca03g00452 563 PIRSF PPA2_B55 1 508 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 8 503 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 389 415 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 116 144 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 475 504 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 307 334 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 250 277 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 335 362 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 388 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 222 249 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 278 306 IPR000009 GO:0000159|GO:0019888
Cca03g00452 563 Pfam WD domain, G-beta repeat 213 250 IPR001680 GO:0005515
Cca03g00452 563 SUPERFAMILY WD40 repeat-like 31 498 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00452 Cca-Chr3 7108578 7125686 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00452 K04354 - gmx:100795137 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00452 03 7108578 7125686 Cca03g00452 03 7108578 7125686 ECH