Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00437 ATGAAAGCAACACTAAGATACTTAGAAGGAATGGCTGGCCCTAGTGGCTTTGGCTCAAATTCAACCGCTGAACAAGTTACTGATGAAAGTTCTCGCTTCCTTCCTCCTGGTCTAACTGCTCTCATCACTGGAGCGAGTTCAGGTATTGGAGCTGAAACGGCTAGGGTGCTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCGGCGAGGGACTTGAAGAAGGCCAGAGAAGTGAAAAAGAACATACAAAAGGAAAATCCAAACGCTGAGATTGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGCTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAACATTCTCATAAACAATGCAGGGATATTTTCTCAAAACTTGGAGTTCTCTGAAGATAAAATTGAGATGACATTTGCTACAAATTACTTGGGTCATTTCTTGTTAACAGAAATCTTATTAGACAAAATGATAGAGACGGCAGAGAAGACAGGTATTCAAGGAAGGATAATAAATGTTTCTTCTGTGATTCATAGCTGGGTGAAGAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAGATACAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCGAAGGAAATAGCCAAGCAACTCAAGGCAAGAAATGCAAGAGTAACTATAAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTAATAACGGATTCCTTATTTTTTATCGCATCAAAGTTACTCAAAACGACATCACAGGGAGCATCAACTACGTGCTATGTTGCTCTGAGCCCAAAAACACGAGGGATCAGTGGAAAATACTTTGCTGACTGCAATGAGAGTCACTGCTCAAGACTGGCAAAAGACGAATCGGAAGCACAAAAGCTATGGAACAACACCCATGCATTGCTTCAGAAACGACTACGTCAAGCAACAATCTGA 993 0.4109 MKATLRYLEGMAGPSGFGSNSTAEQVTDESSRFLPPGLTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAREVKKNIQKENPNAEIVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTGIQGRIINVSSVIHSWVKKDGFRFNDILSGKRYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQGASTTCYVALSPKTRGISGKYFADCNESHCSRLAKDESEAQKLWNNTHALLQKRLRQATI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00437 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Cca03g00437 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Cca03g00437 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Cca03g00437 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Cca03g00437 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Cca03g00437 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Cca03g00437 330 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Cca03g00437 330 Coils Coil 64 84 - -
Cca03g00437 330 CDD retinol-DH_like_SDR_c_like 37 314 - -
Cca03g00437 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Cca03g00437 330 Gene3D - 35 326 - -
Cca03g00437 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
Cca03g00437 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Cca03g00437 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Cca03g00437 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00437 Cca-Chr3 6883210 6887209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00437 41 248 Acyl Lipid Metabolism Gene Families AT3G55290 31.455 1.04e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00437 - - gmx:100801384 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00437 03 6883210 6887209 Cca03g00437 03 6883210 6887209 ECH
Cca11g01814 11 43090586 43093060 Cca03g00437 03 6883210 6887209 PCT