Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00435 ATGGACTCAGATTCCCAACATCATCAAAATACTGATTCTACCTTTCTTTGGGATGAGAAATCGCAACTATATTATCACGCCAGTAGTGGATTTTACCACGACCCTAATGCTGGCTGGTACTATAGCAGCAGAGATAGTGCTTATTACAAATTTGAGGATGGGAATTATGTACTTTTAGATTCCAATAAGGATGATAGTACTGTAGAATCATATGTGTGCAAGGAAACTACAACAGAAAATCCTCCACAAATATATGATGGTAACAACAATGAGGGTTGTCCTTCCTTCCTTGAAAGTAAATTTGAAGCTAACCAACAGACAGGAACCCTGGCTGATGAAGCAGCTGCGGATGCCACAAATTCCGTGAGTAGTCCAACTTGCGAAAACCCTCCCCCACCACCATCAGAATGGTTAGAGGACACACTTATTGACCTTTACTTATCTGGGTACAAGAACACAGCTGTTGGTGAAGCTGATGCAGTGACAGTGCCATTGGAAGTGGATGATAGATATAACTCGTTAGCAGCTGATGTTTATAGCAAAACTTATGAAGTGGAAGGTGCGTGGATGCCAGACCCAGTGGATGAAAATGGCTTAGCTGATAATAAAAGTACTGTAGATGAAGGTATGGCTTACAGCAACACTGATGAACTGGAAGAAGGTGAGTGGGTTCCAGACATGGAAGACGAATATGGCATAGCTGATAGAAGTACCAGTACCATAGATGAAGGTATCTTGCTTGATGAAGAGAAGTGGCGAGCTCAATATGGTCAAGTTACCGAATCAGGGAAAGATCTGGTTTCAGAGGTTCCAATTTTGGACTTGTGGGACTGGGAAATGGTTACTGGATCCAAAAGAGATGGAAAAGATAAGGTGGCAAGGTTGGTTGGAAGACTGGTGAAACCATCTGCAAAACAACATCCATCTATCCCTTCTGGTGGAGGGAAATTAAGATCTGCTCCCATCTGTGAAGCACATCTGGATCTGGTACGAGTTAAAACAGGACAAGTGTACAGATTGCGAAATCCTAGTGCAAAATATGTGGCTTCATTATCAACTTATGATTCTTCCAATCCAACACAGCATTGGGATTTTCCCCGGTTATCATCAAGTAAAAAAATCACTCAGCTCTCCAAATCTGGTGAAAGCTCTGCTTCAGCTTCAGATGAAATCCCTATGGAGGAAGATTTGTCTGCGTTGCCTAGTCAGCTCTCTGCCTCTAAGCAAATAAAATATCAATACAGAGATAGGGCAGCTGAAAGAAGAATATTGCATGGTGGCTTCGGCATGGGTCCAGGACAGAAGAATGTTCCAGACATTGATAATGGGCCATCTTCACCTGTTGCTGGTTGTCCACAAGAAGCCGCATCAGAGGCCTTGGAGATGTCATTTGGAGCAGGTAGTTATGCCAGAAAACTTCTAAAAAGCATGGGTTGGAAGGAGGGGGAAGGGCTTGGGAGTTCTACCAAGGGCTTGGTAGAACCTATTCAACCAGTTGGAAACGTTGGCACTGCGGGATTGGGATGGACTCGTTGA 1536 0.4355 MDSDSQHHQNTDSTFLWDEKSQLYYHASSGFYHDPNAGWYYSSRDSAYYKFEDGNYVLLDSNKDDSTVESYVCKETTTENPPQIYDGNNNEGCPSFLESKFEANQQTGTLADEAAADATNSVSSPTCENPPPPPSEWLEDTLIDLYLSGYKNTAVGEADAVTVPLEVDDRYNSLAADVYSKTYEVEGAWMPDPVDENGLADNKSTVDEGMAYSNTDELEEGEWVPDMEDEYGIADRSTSTIDEGILLDEEKWRAQYGQVTESGKDLVSEVPILDLWDWEMVTGSKRDGKDKVARLVGRLVKPSAKQHPSIPSGGGKLRSAPICEAHLDLVRVKTGQVYRLRNPSAKYVASLSTYDSSNPTQHWDFPRLSSSKKITQLSKSGESSASASDEIPMEEDLSALPSQLSASKQIKYQYRDRAAERRILHGGFGMGPGQKNVPDIDNGPSSPVAGCPQEAASEALEMSFGAGSYARKLLKSMGWKEGEGLGSSTKGLVEPIQPVGNVGTAGLGWTR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00435 511 ProSiteProfiles G-patch domain profile. 466 511 IPR000467 GO:0003676
Cca03g00435 511 PANTHER RNA-BINDING PROTEIN 7 509 - -
Cca03g00435 511 CDD OCRE 13 54 - -
Cca03g00435 511 Pfam G-patch domain 468 508 IPR000467 GO:0003676
Cca03g00435 511 Pfam OCRE domain 12 53 IPR041591 -
Cca03g00435 511 SMART G-patch_5 464 510 IPR000467 GO:0003676
Cca03g00435 511 PANTHER D111/G-PATCH DOMAIN-CONTAINING PROTEIN 7 509 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00435 - - gmx:100806477 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00435 03 6846848 6852555 Cca03g00435 03 6846848 6852555 ECH