Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g00431 | ATGTTGATTCGGTTCGAATGGCTCCATTCCGAACTCAGCAACATTTGTAGGCCCCTCTTGAGGGCGAAGCAGTTACACGCATTTCTTTTGAAGACCCATCTCTCAGAGGACCCCTTTTACGCAACAAAAATCGTTAGGCTCTACGCAGCCAACAACGACATTAACTCTGCCCACCATGTGTTTGATAATACTTCCACCCGAAGTGTCTACCTTTGGAATTCCATGATTCGGGCTTTTGCGCAGTCCCGAAGATTTTCCAATGCAATCGCTCTGTTTAGAGCCATGCTTGGGGCTGACATTAGTCCTGACAGCCACACTTATGCCTGTGTTATACGTGCCTGTGCTGACAACTTTGATTACGGTACGCTAAGACGTGTTCATGGAGGTGCTGTGGCTGCAGAGTTGGGAATGGACCCTATTTGTTGCAGTGCACTTGTGACTGCTTATTCGAAACTAGGCCTTGTTCATGAAGCGCATAGAGTGTTCAATGGGATCGCTGAACCGGATTTAGTGTTGTGGAATTCATTGATTTCTGGTTATGGGGGGTTTGGTATGTGGGATGTAGGGATGCAGATGTTTAGCGCGATGAGAGTTGTTGGGAAGAAGCCTGATGGATATACACTGGCTGGGTTGCTTGTGGGTATTGCGGATTCTGGGGTGCTAAGTATTGGTCAAGGATTACATTGTTTGAGTCAAAAGAGTGGCCTTGATTCTGATTCTCATGTTGGTAGTTTGCTGGTGAGTATGTACTCGAGATGTAAGTGCATGGCTTCGGCATATAGAGTCTTTTTAAGTATTTTGAATCCTGATTTGGTCACATGGTCTGCTCTTATAGCGGGGTATTCACAGTCTGGGGAGTATGGGAATCTGCTGCACTTTTTTAGGAAATTAAACATGGAAGGCAAGAAGCCAGATTCTGTTTTGATCGCTAGTGTATTGGCTTCTATTGCTCAGACGGTGAATGTAGGACTTGGATGTGAGGTACATGGTTATGCTCTTCGGCATGGATTGGAATTAGATGTCAGGGTCTCCTCTGCTCTAATAGACATGTATTTGAAATGTGGTTTCTTGCACCTGGGGATTTGTGTTTTCAGGATAATGCCAGAACGGAATGTTGTTTCGTATAATTCAGTAATTTTAGGTTTTGGCTTGCATGGGTGTGCTTCCGAGGCTTTCAGGATGTTTGATAAGATGCTGAAGCAAGGACTGGTACCCGATGAAGCGACATTCTCTTCTCTCCTATGTGCCTGTTGTCATGCTGGCCTTGTCGAAGGTGGTCGAGAGATTTTCCAGAGAATGAAAGATGAATTTAACATCAGAGCTAGGCCTGAGCATTATGTTTACATGGTGAAGCTCCTTGGCAGTGTTGGGTTGTTGGAAGAGGCTTACAATCTGATCCAGTCCTTACCAGAACCAGTAGACAAGGCTATCCTGGGAGCCTTATTATCATGCTGTAATTCTTGTGGAAATTCTGAGCTTGCAGAAACTGTAGCACAGAAGCTTTCTGAAAGTAATCCTGCTGATAATGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGACAAAATGACGGGAGATATAGAGAGGCTTCTCAGAAAGGTACCAGTAGATCTTGTCATTGATCACTCAGTTCAGGTTGATGCAGCAAGATCAGAAAATACTGTGCAGGCAATGCAGCAAGATCCAAAATGTGTTTTCCATCCAAATGTGTTGCTCTTCGTGGGTGCAGTTGATATGTTTTGCGGGTTGTTTCAAATCATTTTGAACCTTGAAGAGGCTTCTTATGAGCTATCGAGGAAACTGGATGAAGAACTAAAGATGCATCTCGAACAAAAGGCAATTATCACATTGAAGCTGCACGTCGTCATACCTTTTGTATCACGGACTTGCATTTTCGGCTTGGCCCAGTGGCCCACCCATGATGTGTTTTTCTAA | 1962 | 0.4439 | MLIRFEWLHSELSNICRPLLRAKQLHAFLLKTHLSEDPFYATKIVRLYAANNDINSAHHVFDNTSTRSVYLWNSMIRAFAQSRRFSNAIALFRAMLGADISPDSHTYACVIRACADNFDYGTLRRVHGGAVAAELGMDPICCSALVTAYSKLGLVHEAHRVFNGIAEPDLVLWNSLISGYGGFGMWDVGMQMFSAMRVVGKKPDGYTLAGLLVGIADSGVLSIGQGLHCLSQKSGLDSDSHVGSLLVSMYSRCKCMASAYRVFLSILNPDLVTWSALIAGYSQSGEYGNLLHFFRKLNMEGKKPDSVLIASVLASIAQTVNVGLGCEVHGYALRHGLELDVRVSSALIDMYLKCGFLHLGICVFRIMPERNVVSYNSVILGFGLHGCASEAFRMFDKMLKQGLVPDEATFSSLLCACCHAGLVEGGREIFQRMKDEFNIRARPEHYVYMVKLLGSVGLLEEAYNLIQSLPEPVDKAILGALLSCCNSCGNSELAETVAQKLSESNPADNVMLSNIYAGDGRWDDVKKLRDKMTGDIERLLRKVPVDLVIDHSVQVDAARSENTVQAMQQDPKCVFHPNVLLFVGAVDMFCGLFQIILNLEEASYELSRKLDEELKMHLEQKAIITLKLHVVIPFVSRTCIFGLAQWPTHDVFF | 653 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g00431 | 653 | Gene3D | Tetratricopeptide repeat domain | 132 | 223 | IPR011990 | GO:0005515 | |
| Cca03g00431 | 653 | Gene3D | Tetratricopeptide repeat domain | 225 | 319 | IPR011990 | GO:0005515 | |
| Cca03g00431 | 653 | Gene3D | Tetratricopeptide repeat domain | 11 | 131 | IPR011990 | GO:0005515 | |
| Cca03g00431 | 653 | Gene3D | Aconitase, domain 3 | 523 | 576 | IPR015931 | - | |
| Cca03g00431 | 653 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | IPR002885 | - | |
| Cca03g00431 | 653 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 406 | 436 | IPR002885 | - | |
| Cca03g00431 | 653 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 68 | 102 | IPR002885 | - | |
| Cca03g00431 | 653 | TIGRFAM | PPR: pentatricopeptide repeat domain | 409 | 436 | IPR002885 | - | |
| Cca03g00431 | 653 | TIGRFAM | PPR: pentatricopeptide repeat domain | 70 | 104 | IPR002885 | - | |
| Cca03g00431 | 653 | TIGRFAM | PPR: pentatricopeptide repeat domain | 171 | 204 | IPR002885 | - | |
| Cca03g00431 | 653 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 407 | IPR002885 | - | |
| Cca03g00431 | 653 | Pfam | PPR repeat | 272 | 297 | IPR002885 | - | |
| Cca03g00431 | 653 | Pfam | PPR repeat | 171 | 198 | IPR002885 | - | |
| Cca03g00431 | 653 | Pfam | PPR repeat | 141 | 163 | IPR002885 | - | |
| Cca03g00431 | 653 | PANTHER | OS01G0545900 PROTEIN | 5 | 535 | - | - | |
| Cca03g00431 | 653 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | IPR002885 | - | |
| Cca03g00431 | 653 | Gene3D | Tetratricopeptide repeat domain | 320 | 442 | IPR011990 | GO:0005515 | |
| Cca03g00431 | 653 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 5 | 535 | - | - | |
| Cca03g00431 | 653 | Pfam | PPR repeat family | 68 | 115 | IPR002885 | - | |
| Cca03g00431 | 653 | Pfam | PPR repeat family | 370 | 419 | IPR002885 | - | |
| Cca03g00431 | 653 | Pfam | E motif | 490 | 532 | IPR046848 | - | |
| Cca03g00431 | 653 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 270 | 304 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g00431 | Cca-Chr3 | 6765012 | 6773541 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g00431 | 27 | 532 | Glycoside Hydrolase | AT3G49170 | 29.457 | 7.45e-68 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g00431 | - | - | gmx:100820049 | 959.518 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g00431 | 03 | 6765012 | 6773541 | Cca03g00431 | 03 | 6765012 | 6773541 | ECH |