Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00398 ATGGGTGGATCAATTTCAAAACGGAGGAGGAGTTTTAGGCAACGTTCGTCCTCAAGTTTCTTTCCTCAGTATCAATCTCCTTATTTGCCACAAACACAAATCCAAGATCATGGGTCTGCGGGGCATTACGGGTACTCATCTCCAAGCCATAGTGGTGGTCGTGCTCCAGAGCAAGGAAAGCGCTCAGATACGAAGTTTTCAAGGATAGGTGATAATTATAAGAGCTTGGACCAGGTAACTGAAGCTCTGGCAAGTGCTGGTCTAGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACGAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTCAAAGGAGATGCCTGCACCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACACATGACCAAGAAGTTTTTAGTTTCTGTCCTGATGATAGATTTTGTCATGGTTTTGAAGAAGTGTTGGAACGGTACAGGGAATTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATTGTTGAGCAAAGTGGAGGCCAGTACCATGTCTTATTAATTATAGCGGATGGCCAGGTGACAAGAAGTGTTGACACCGGGCATGGACAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAACAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGGCATGTATCTTCTGTGCAAAATTTGTGAATTTCACCGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAGCAGAGTTTGCACTCGCTGCTTTGATGGAAATACCCTCCCAATACAAGGCAACACTAGAGCTTAATATATTGGGTGCTCGTAGAGGGAAATCTATTGACAGGTTTCCTCTACCACCACCTCAATATGGCGCACCTCAATATGGCGCAGCATCTTTCAATTCTCCAAAAACTTCTCGTCAGAATAGTTTTCGTCCCAGTGCACCGGCTAGCAAACATGATGTTAGCACAGACCCTCCTGCAAGTTCCATTTCTGATAATCAGTATTGTGTCATTTGCCTCTCCAATCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAGTGTGGACAAAATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGTTACTAGATTAAAACTGTATTAG 1332 0.4279 MGGSISKRRRSFRQRSSSSFFPQYQSPYLPQTQIQDHGSAGHYGYSSPSHSGGRAPEQGKRSDTKFSRIGDNYKSLDQVTEALASAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFCPDDRFCHGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTGHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQACIFCAKFVNFTEIMSKNMDRSRKEAEFALAALMEIPSQYKATLELNILGARRGKSIDRFPLPPPQYGAPQYGAASFNSPKTSRQNSFRPSAPASKHDVSTDPPASSISDNQYCVICLSNPKDMAFGCGHQTCCECGQNLELCPICRSTIVTRLKLY 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00398 443 ProSiteProfiles Zinc finger RING-type profile. 400 433 IPR001841 -
Cca03g00398 443 PANTHER RING-FINGER PROTEIN 1 443 - -
Cca03g00398 443 CDD RING-HC_RGLG_plant 400 443 IPR045317 GO:0061630|GO:0070534
Cca03g00398 443 MobiDBLite consensus disorder prediction 15 46 - -
Cca03g00398 443 Pfam Copine 115 335 IPR010734 -
Cca03g00398 443 MobiDBLite consensus disorder prediction 359 393 - -
Cca03g00398 443 SUPERFAMILY vWA-like 91 274 IPR036465 -
Cca03g00398 443 MobiDBLite consensus disorder prediction 1 68 - -
Cca03g00398 443 PANTHER COPINE FAMILY PROTEIN 1 1 443 - -
Cca03g00398 443 SUPERFAMILY RING/U-box 394 439 - -
Cca03g00398 443 Pfam Zinc finger, C3HC4 type (RING finger) 397 436 - -
Cca03g00398 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 443 IPR013083 -
Cca03g00398 443 SMART VWA_4 90 290 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00398 Cca-Chr3 6098373 6101972 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00398 K16280 - gmx:100809850 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00398 03 6098373 6101972 Cca03g00398 03 6098373 6101972 ECH