Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00392 ATGACCAGCTACCCTCCTCGCCAGCTACCATCATCTACTCCTAAGATGTCTCAAAGGAAGGAGCGACGCATGTTCTCAACTTCTGATGACAGTGCCATGACCAAGCAAGTTCAGGCCACGCATGCACCTGATGGTCGTGATATTGATGTCAAACCAATCCTCCAAATCGTCGACGAAATCTTGGTTCGATTCATTGCTCGCACTGTTGAGGGTCATGATGTAAGACGAGACCAAGATGCATTGGAGATGACTGCTGCTCTGGCTGAATTTGACATGCTTGATTCGCTGGCTTATATCATAAACAAAATTTCCTGCGAGCTGTCATGCAAGTGCTCAGGAGGTGGCGATGCACATTCATCAACAATGGTTTTACTGAATTACATGTCTAGCTATGCATGGCATGCGAAAGTTGTGCTAACCTTAGCAGCTTTTTCTGTTATTTTCGGAGAGTTTTGGCTTGTTGCTCAGTTAAGTACTGAAAATACACTTGCCAAGTCCGTGGCCCTCCTTAAGCAACTGCCAGACATTGCAGAGAATTTTATGTCCTTGAAACCCCATTTTGAAGCACTCATTAGGCTCGTGAAAGCAGCAATGGATGTAACCATGTGCATTGTTGAATTCAAGGAGCTACCATCTGAATACATTTCAGAGGACACACCTCCTATGTCTGTTGCCAGCACTCACATTCCTATTGCTTCCTATTGGGTCATCCGAAGTATTGTGGCTTGTGCCTCACAAATTGCTAGTCTCATAGGCACAAGAAATGAGTCCATTTCATCAGCCACAGAGGCATGGGAATTATCCAGTCTGGCTCACAAAGTTACTAGTATATACGAGCACCTCAAGAAGCAATTGCATCTTTGCTACCAATATATAGATGACAAGAGGCATGTTGAGGCCTACCATAATCTGATACGCCTTTTCGAGACAGTGCATGTAGACAACATGAAAATTCTGAGAGCACTGATATATGCAAAGGATGATATTCTTCCACTTGTGGATGGAACTACAAAATCAAGGGTTAGCCTGGAGGTACTAAGGAGAAAACATGTGTTGCTGCTCATATCAGATCTTGATCTTTCACAAGAAGAGATCTTGGTGCTTGATAATTTATACAAAGATGCACGAACAAGGGCTGATACTCAATATGAGATGGTATGGGTCCCAATTGTGGACAAAGCGGTCTGGAATGAAGTGAACAAACAGAAGTTTGAGTATTTGCAATCATTGATGGCATGGTTTAGTGTGTGCGATCCTTTCATCATTGAACCATCGGCAGTTAAGTATATCAAAGAAGTGTGGAACTTCTCAAAGACGGCTATTTTAGTGGCCCTTGATCCACAAGGCAGATTGTCCTCCCCTAATGCTGTTCACATGATATGGATTTGGGGTAATTTGGCCTTCCCCTTCACAAGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGATTTGGAGCCTTGAGCTACTTGTTGATGGCATTGATCCTACAGTTTTGGAATGGATGACAGAGGGAAAACTGATATGCCTGTACGGAGGAGAAGACCTGGAGTGGATAGAAAAATTCACAGCAACAGCCTTAAACGTGGCAAAAGTGGGGAATTTGGAGCTAGAGATGGCTTACGTGGGAAAGAGCAACGCGAAGGAGCGCATGCAGAAGATGATAAAAACCTTCATGTCACGAAAGTTCAGCTACTTCTGGCCCAACGTGACGTCCATCTGGTTCTTCTGGACGCGTTTGGAGAGCATGCTGTACTCCAAGTTGCTGCACGGGAAGACGGTGGAGAACGACGAGATCATGAGCGAGGTCATGACGGTGCTGAGCTTCGACGGCAGCGACCGAGGCTGGACCATATTCTGCAGAGGCGCCACCGAAATGGCTCGAGCCAAGGGTGACACTGCTATCGAGTGTTTGTCCAAGTTTGATGAGTGGGGGCCTAGGATGGACGAGGAAGGTGGCTTTGTGCCGGCGATGAATAATTACCTTAACACGAATAAGCCACCGCATCACTGCAACAGGCTCATTCTTCCGGGGAGCACTGGGGGCATACCGCAGAAGGTTGTGTGCGCTGAGTGTGGACGCCAGATGGAGAAGTACTTCATGTATCGTTGTTGTGTTGAGTAA 2121 0.4597 MTSYPPRQLPSSTPKMSQRKERRMFSTSDDSAMTKQVQATHAPDGRDIDVKPILQIVDEILVRFIARTVEGHDVRRDQDALEMTAALAEFDMLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYMSSYAWHAKVVLTLAAFSVIFGEFWLVAQLSTENTLAKSVALLKQLPDIAENFMSLKPHFEALIRLVKAAMDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACASQIASLIGTRNESISSATEAWELSSLAHKVTSIYEHLKKQLHLCYQYIDDKRHVEAYHNLIRLFETVHVDNMKILRALIYAKDDILPLVDGTTKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARTRADTQYEMVWVPIVDKAVWNEVNKQKFEYLQSLMAWFSVCDPFIIEPSAVKYIKEVWNFSKTAILVALDPQGRLSSPNAVHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPTVLEWMTEGKLICLYGGEDLEWIEKFTATALNVAKVGNLELEMAYVGKSNAKERMQKMIKTFMSRKFSYFWPNVTSIWFFWTRLESMLYSKLLHGKTVENDEIMSEVMTVLSFDGSDRGWTIFCRGATEMARAKGDTAIECLSKFDEWGPRMDEEGGFVPAMNNYLNTNKPPHHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00392 706 Pfam Sieve element occlusion N-terminus 28 312 IPR027942 -
Cca03g00392 706 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 14 705 IPR039299 GO:0010088
Cca03g00392 706 Pfam Sieve element occlusion C-terminus 474 704 IPR027944 -
Cca03g00392 706 MobiDBLite consensus disorder prediction 1 15 - -
Cca03g00392 706 MobiDBLite consensus disorder prediction 1 34 - -
Cca03g00392 706 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 14 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00392 Cca-Chr3 6058691 6062415 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00392 - - ccaj:109815449 1427.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00392 03 6058691 6062415 Cca03g00392 03 6058691 6062415 ECH