Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00386 ATGGCTACGAGTGGAAGCGTTGAGGGGCAGAAGAACCCTGCCCTTGAACCGGATTTGGATAGTCCGGATAAGGCGGATCACGAGTTGGCTGAATTCGGAGCGGGTTGCTTCTGGGGCGTGGAATTGGCCTTTCAGCGAGTGGAAGGAGTGGTGAAGACTGAAGTTGGGTATAGTCAGGGTCACACACCGGATCCCAATTACAAACTGGTTTGCACCGGAAGCACTAACCACGTTGAAGTTGTTCGCCTCCAGTTCGACCCCAAACTTTGCCCCTACACCCATCTCCTCGCTCTCTTTTGGTCTCGACACAACCCCACTTCCATCAACCGCCAGGGCAATGATGTGGGTGCACAGTATAGATCAGGAATATACTACTTCAACGAGACACAGGCTCGTTTAGCCCAAGAATCGAAAGAAGCAAAACAGTTGGAATTGAAGGAGAAGATTGTGACAGAAATACTTCCAGCTAAGAAGTTTTACAAAGCAGAGGAGTACCATCAACAATATCTGGAGAAGGGTGGAGGTCAAGGTAACAAACAATCTGCAGCAAAGGGCTGCAATGATCCCATCAGGTGCTATGGCTGA 585 0.4974 MATSGSVEGQKNPALEPDLDSPDKADHELAEFGAGCFWGVELAFQRVEGVVKTEVGYSQGHTPDPNYKLVCTGSTNHVEVVRLQFDPKLCPYTHLLALFWSRHNPTSINRQGNDVGAQYRSGIYYFNETQARLAQESKEAKQLELKEKIVTEILPAKKFYKAEEYHQQYLEKGGGQGNKQSAAKGCNDPIRCYG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00386 194 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g00386 194 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 8 194 - -
Cca03g00386 194 TIGRFAM msrA: peptide-methionine (S)-S-oxide reductase 29 172 IPR002569 GO:0008113
Cca03g00386 194 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 27 184 IPR002569 GO:0008113
Cca03g00386 194 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE FAMILY PROTEIN 8 194 - -
Cca03g00386 194 Coils Coil 126 146 - -
Cca03g00386 194 Pfam Peptide methionine sulfoxide reductase 31 173 IPR002569 GO:0008113
Cca03g00386 194 SUPERFAMILY Peptide methionine sulfoxide reductase 24 175 IPR036509 GO:0008113
Cca03g00386 194 Gene3D Peptide methionine sulphoxide reductase MsrA 16 194 IPR036509 GO:0008113
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00386 Cca-Chr3 6012204 6015930 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00386 K07304 - gmx:100527085 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00386 03 6012204 6015930 Cca03g00386 03 6012204 6015930 ECH